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Protein Overview: sdn-1

General Information:
Name(s) found: sdn-1 / CE05996 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00004749 locus:sdn-1 Probable syndecan status:Confirmed UniProt:P50605 protein_id:CAA93474.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 288 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: epidermis morphogenesis [IGI][IMP]
    nematode larval development [IGI]
    embryonic development ending in birth or egg hatching [IGI]
    inductive cell migration [IMP]
    Molecular Function: cytoskeletal protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILKLNFCLS TYSVLILLSL STQAFAANQA KTKVVPSSTI STKSLKNGIS EQVEGSANIP  60
   61 GRLADIEVNG SGYPTDDEDG DDVHGSGKPP SSATTKSDKV TSPSHAVVTA KPTTVPTTTA 120
  121 SFKPPVQPKP KPAANDKEIK VEEDEDDDED EDEDDEDDEE DFADENIHND EDFFTTTTTT 180
  181 TYRPIVVATT STPRSAATNP PRQQPPMVTS TISSGPFSPF HETLANGFYA AIAGGVLVAV 240
  241 ITAILLVLFV VFRIRKKDEG SYALDEPKQA RPYASYGYTK ASTKEFYA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..121] MSA 1.088996 View MSA. No confident structure predictions are available.
    2 View Details [122..288] MSA 8.098996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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