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Protein Overview: col-13

General Information:
Name(s) found: col-13 / CE05639 [WormBase]
Description(s) found:
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  • WBGene00000602 locus:col-13 Cuticle collagen 13 status:Partially_confirmed UniProt:P20631 protein_id:CAA98258.1 [WormBase]
  • pir||S08170 collagen col-13 precursor - Caenorhabditis elegans [NCBI NR]
  • gi|6682|emb|CAA35955.1| collagen [Caenorhabditis elegans] [NCBI NR]
  • gi|3875995|emb|CAA98258.1| C. elegans protein F15H10.2, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17559060|ref|NP_505677.1| COLlagen family member (col-13) [Caenorhabditis elegans] [NCBI NR]
  • gi|115406|sp|P20631.1|COL13_CAEEL RecName: Full=Cuticle collagen 13; Flags: Precursor [NCBI NR]
  • Cuticle collagen 13 OS=Caenorhabditis elegans GN=col-13 PE=3 SV=1 [Swiss-Prot]
  • (P20631) Cuticle collagen 13 precursor [Swiss-Prot]
  • [wormpep67.fasta]
  • CE05639 WBGene00000602 locus:col-13 collagen status:Partially_confirmed SW:P20631 protein_id:CAA98258.1 [wormpep150.fasta]
  • 05639 WBGene00000602 locus:col-13 collagen status:Partially_confirmed SW:P20631 protein_id:CAA98258.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • COLlagen structural gene (col-13) [Caenorhabditis elegans]gi|3875995|emb|CAA98258.1| Hypothetical protein F15H10.2 [Caenorhabditis elegans]gi|84430|pir||S08170 collagen col-13 precursor - Caenorhabditis elegansgi|6682|emb|CAA35955.1| collagen [Caenorha [nrdb_11152004_Chlamydomonas]
  • locus:col-13 collagen status:Partially_confirmed SW:P20631 protein_id:CAA98258.1 [wormpep115.fasta.reversed]
  • CE05639 locus:col-13 collagen status:Predicted SW:P20631 protein_id:CAA98258.1 [wormpep80.hongbin]
  • CE05639 WBGene00000602 locus:col-13 collagen status:Partially_confirmed UniProt:P20631 protein_id:CAA98258.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05639 WBGene00000602 locus:col-13 collagen status:Partially_confirmed UniProt:P20631 protein_id:CAA98258.1| [wormORF-contam.fasta]
  • collagen [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Cuticle collagen 13 precursor [nr-271106-contam.fasta]
  • Hypothetical protein F15H10.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F15H10.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05639 WBGene00000602 locus:col-13 status:Partially_confirmed UniProt:P20631 protein_id:CAA98258.1 Cuticle collagen 13 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 316 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: phosphate transport [IEALink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDLKQIAQ ETESLRKVAF FGIAVSTIAT LTAIIAVPML YNYMQHVQSS LQSEVEFCQH  60
   61 RSNGLWDEYK RFQGVSGVEG RIKRDAYHRS LGVSGASRKA RRQSYGNDAA VGGFGGSSGG 120
  121 SCCSCGSGAA GPAGSPGQDG APGNDGAPGA PGNPGQDASE DQTAGPDSFC FDCPAGPPGP 180
  181 SGAPGQKGPS GAPGAPGQSG GAALPGPPGP AGPPGPAGQP GSNGNAGAPG APGQVVDVPG 240
  241 TPGPAGPPGS PGPAGAPGQP GQAGSSQPGG PGPQGDAGAP GAPGAPGQAG APGQDGESGS 300
  301 EGACDHCPPP RTAPGY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..316] PSI-BLAST 33.221849 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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