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Protein Overview: CE05602

General Information:
Name(s) found: CE05602 [WormBase]
Description(s) found:
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  • WBGene00008732 Putative pyridoxal-phosphate dependent protein F13B12.4 status:Partially_confirmed UniProt:Q19374 protein_id:CAA94589.1 [WormBase]
  • pir||T20819 hypothetical protein F13B12.4 - Caenorhabditis elegans [NCBI NR]
  • gi|74963726|sp|Q19374.1|YSL1_CAEEL RecName: Full=Putative pyridoxal-phosphate dependent protein F13B12.4; Flags: Precursor [NCBI NR]
  • gi|3875828|emb|CAA94589.1| C. elegans protein F13B12.4, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17539800|ref|NP_501928.1| hypothetical protein F13B12.4 [Caenorhabditis elegans] [NCBI NR]
  • Putative pyridoxal-phosphate dependent protein F13B12.4 OS=Caenorhabditis elegans GN=F13B12.4 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE05602 WBGene00008732 cysteine synthase like status:Partially_confirmed TR:Q19374 protein_id:CAA94589.1 [wormpep150.fasta]
  • 05602 WBGene00008732 cysteine synthase like status:Partially_confirmed TR:Q19374 protein_id:CAA94589.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • cysteine synthase precursor (48.7 kD) (4L210) [Caenorhabditis elegans]gi|3875828|emb|CAA94589.1| Hypothetical protein F13B12.4 [Caenorhabditis elegans]gi|7498980|pir||T20819 hypothetical protein F13B12.4 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • cysteine synthase like status:Partially_confirmed TR:Q19374 protein_id:CAA94589.1 [wormpep115.fasta.reversed]
  • CE05602 cysteine synthase like status:Partially_confirmed TR:Q19374 protein_id:CAA94589.1 [wormpep80.hongbin]
  • CE05602 WBGene00008732 cysteine synthase like status:Partially_confirmed UniProt:YSL1_CAEEL protein_id:CAA94589.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05602 WBGene00008732 cysteine synthase like status:Partially_confirmed UniProt:YSL1_CAEEL protein_id:CAA94589.1| [wormORF-contam.fasta]
  • Putative pyridoxal-phosphate dependent protein F13B12.4 precursor [nr-271106-contam.fasta]
  • Hypothetical protein F13B12.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F13B12.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE05602 WBGene00008732 cysteine synthase like status:Partially_confirmed SW:Q19374 protein_id:CAA94589.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE05602 WBGene00008732 cysteine synthase like status:Partially_confirmed UniProt:Q19374 protein_id:CAA94589.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05602 WBGene00008732 status:Partially_confirmed UniProt:Q19374 protein_id:CAA94589.1 Putative pyridoxal-phosphate dependent protein F13B12.4 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 435 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: metabolic process [IEALink to PubMed article]
    cysteine biosynthetic process from serine [IEALink to PubMed article]
    Molecular Function: pyridoxal phosphate binding [IEALink to PubMed article]
    catalytic activity [IEALink to PubMed article]
    cysteine synthase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLLLALFL SISASCLAED ITKISESRIP NEDAVPDYEA KWRLGAIQKL WNERRKMGHT  60
   61 PMTKFSPPGF PNADIFFKNE TATATRTLKH RFAWALLLWA ITEGKVTSKT SAVYDSTSGN 120
  121 TGSAEAYMCT LVNVPYYAVV ADNLEKEKVK QIESFGGKII KVPVALRNAK AKEFADKNHG 180
  181 FYMNQFGNAE KAEEFHESGD FYFESTNVYH EIIVQLKKDK EQIVKIPDYF VHSAGTGGTI 240
  241 SSVGRYVARY GAPTKVVLSD SQYSLFYDYV IGHKFTNQSG AGIWTPPGIA GIGYGYDIEP 300
  301 VWYGETTSLT RNVIHEAMKM PDIASVATMR ILDEKGYNVG PSTSLNFLVS LYKAYQNKAR 360
  361 KSAIKHRLTI VTLACDPGDF YRSTYLNNEW VEKSFKKFGG VMGMECWKKL IQESIDTGSD 420
  421 FYSKGLTMCP GAFKV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..435] PSI-BLAST 86.522879 Cystathionine beta-synthase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • cysteine synthase activity
    		•  5.18562032111987 bayes_pls_golite062009
  • catalytic activity
    		•  2.38994231321972 bayes_pls_golite062009
  • lyase activity
    		•  1.87743897464083 bayes_pls_golite062009
  • cystathionine beta-synthase activity
    		•  1.4517088142802 bayes_pls_golite062009
  • tryptophan synthase activity
    		•  1.04832999357666 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.923824749425553 bayes_pls_golite062009
  • threonine synthase activity
    		•  0.727838845253199 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.476674617721478 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  0.37325071016009 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.249761226675912 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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