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Protein Overview: CE05556

General Information:
Name(s) found: CE05556 [WormBase]
Description(s) found:
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  • WBGene00008542 locus:scav-6 status:Confirmed UniProt:Q19140 protein_id:CAA96619.1 [WormBase]
  • pir||T20537 hypothetical protein F07A5.3 - Caenorhabditis elegans [NCBI NR]
  • gi|3875469|emb|CAA96619.1| C. elegans protein F07A5.3, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17506523|ref|NP_492081.1| hypothetical protein F07A5.3 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE05556 WBGene00008542 membrane glycoprotein status:Confirmed TR:Q19140 protein_id:CAA96619.1 [wormpep150.fasta]
  • 05556 WBGene00008542 membrane glycoprotein status:Confirmed TR:Q19140 protein_id:CAA96619.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CD36 antigen family member (67.0 kD) (1H935) [Caenorhabditis elegans]gi|3875469|emb|CAA96619.1| Hypothetical protein F07A5.3 [Caenorhabditis elegans]gi|7498513|pir||T20537 hypothetical protein F07A5.3 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • membrane glycoprotein status:Partially_confirmed TR:Q19140 protein_id:CAA96619.1 [wormpep115.fasta.reversed]
  • CE05556 membrane glycoprotein status:Partially_confirmed TR:Q19140 protein_id:CAA96619.1 [wormpep80.hongbin]
  • CE05556 WBGene00008542 membrane glycoprotein status:Confirmed UniProt:Q19140_CAEEL protein_id:CAA96619.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05556 WBGene00008542 membrane glycoprotein status:Confirmed UniProt:Q19140_CAEEL protein_id:CAA96619.1| [wormORF-contam.fasta]
  • Hypothetical protein F07A5.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F07A5.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE05556 WBGene00008542 membrane glycoprotein status:Confirmed UniProt:Q19140 protein_id:CAA96619.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05556 WBGene00008542 locus:scav-6 membrane glycoprotein status:Confirmed UniProt:Q19140 protein_id:CAA96619.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE05556 WBGene00008542 locus:scav-6 status:Confirmed UniProt:Q19140 protein_id:CAA96619.1 [wormpep246-ecoli-contam.fasta]
  • SCAVenger receptor (CD36 family) related OS=Caenorhabditis elegans GN=scav-6 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 590 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: cell adhesion [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFRIRINKL DVFLVVIAIV FIVFGIVTWA AFSSIYSTLV IKNLQLTENS DTSLGYSAFQ  60
   61 YTSPQVDNIM KFYFFNVTNP DEVKYYSAAP NLVEIGPFSV MESEQKKYLE FSDDKSQMFY 120
  121 QNYKKYILSK DYSCEDCDWD RNIVFPNPPG LGAVASMLDP QFQITKTGRT IIAVALTILG 180
  181 EYPFVSHKVR EVLFDGYEDA LLSAAHSGFV TVLSGIFKGD GGSIVPIPIP AMPKFGYFQG 240
  241 YNNSRDEEYW IETGKKDINQ IGNVQRWAGI TELPGEWWTT PKARSIRGSD SGSFTQMHLD 300
  301 ESSTADMFFS FMCRSFTKTF YQRETIESIP TIGYHIGYDE WDTTSDNNVG FRYRNIEKRN 360
  361 YFPDWPKCPP KGQCHQSGSI DCSKSINFCH ACCDGSLYNG TYLLPPGMFP LVCYPGRLQP 420
  421 TPFAVVYSPP HFLFSPDEVR TTVVGMAPNK SLHEPMIYYH EPYSGTTLKV VNRLQVNMPV 480
  481 IRSHDVPSSQ NMPNVMIPLF WQDTSPKYHQ FIFNEVWLGF VLVPRLMRVL QFVALGIGLL 540
  541 LVAIIVFLQL RKGKPSLIRP LKTSFLETTS NWLSSTSSSN SNESRGLRRM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] MSA 5.118983 View MSA. No confident structure predictions are available.
    2 View Details [137..274] MSA 2.125988 View MSA. No confident structure predictions are available.
    3 View Details [275..444] MSA 1.125983 View MSA. No confident structure predictions are available.
    4 View Details [445..590] MSA 4.120984 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle