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Protein Overview: cyc-1

General Information:
Name(s) found: cyc-1 / CE05514 [WormBase]
Description(s) found:
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  • WBGene00000869 locus:cyc-1 status:Confirmed UniProt:Q18853 protein_id:CAA99820.1 [WormBase]
  • pir||T20237 hypothetical protein C54G4.8 - Caenorhabditis elegans [NCBI NR]
  • gi|3875259|emb|CAA99820.1| C. elegans protein C54G4.8, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17506225|ref|NP_492207.1| CYtochrome C family member (cyc-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE05514 WBGene00000869 locus:cyc-1 cytochrome C1, heme protein status:Confirmed TR:Q18853 protein_id:CAA99820.1 [wormpep150.fasta]
  • 05514 WBGene00000869 locus:cyc-1 cytochrome C1, heme protein status:Confirmed TR:Q18853 protein_id:CAA99820.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • cytochrome c1 (31.0 kD) (1I600) [Caenorhabditis elegans]gi|3875259|emb|CAA99820.1| Hypothetical protein C54G4.8 [Caenorhabditis elegans]gi|7497953|pir||T20237 hypothetical protein C54G4.8 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • cytochrome C1, heme protein status:Confirmed TR:Q18853 protein_id:CAA99820.1 [wormpep115.fasta.reversed]
  • CE05514 cytochrome C1, heme protein status:Confirmed TR:Q18853 protein_id:CAA99820.1 [wormpep80.hongbin]
  • CE05514 WBGene00000869 locus:cyc-1 cytochrome C1, heme protein status:Confirmed UniProt:Q18853_CAEEL protein_id:CAA99820.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05514 WBGene00000869 locus:cyc-1 cytochrome C1, heme protein status:Confirmed UniProt:Q18853_CAEEL protein_id:CAA99820.1| [wormORF-contam.fasta]
  • Hypothetical protein C54G4.8 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • C54G4.8 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE05514 WBGene00000869 locus:cyc-1 cytochrome C1, heme protein status:Confirmed UniProt:Q18853 protein_id:CAA99820.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05514 WBGene00000869 locus:cyc-1 status:Confirmed UniProt:Q18853 protein_id:CAA99820.1 [wormpep246-ecoli-contam.fasta]
  • CYtochrome C OS=Caenorhabditis elegans GN=cyc-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 285 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: electron transport [IEALink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of embryonic development [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: iron ion binding [IEALink to PubMed article]
    electron carrier activity [IEALink to PubMed article]
    heme binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRAVVQGSK RGLAALAGVT AASGMGLVYA LENSVSASGD NVHPYALPWA HSGPFSSFDI  60
   61 ASVRRGYEVY KQVCAACHSM KFLHYRHFVD TIMTEEEAKA EAADALINDV DDKGASIQRP 120
  121 GMLTDKLPNP YPNKKAAAAA NNGAAPPDLS LMALARHGGD DYVFSLLTGY LEAPAGVKVD 180
  181 DGKAYNPYFP GGIISMPQQL FDEGIEYKDG TPATMSQQAK DVSAFMHWAA EPFHDTRKKW 240
  241 ALKIAALIPF VAVVLIYGKR HIWSFTKSQK FLFKTVKGRE PPKAQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..285] PSI-BLAST 107.0 Cytochrome bc1 domain; Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquinol-cytochrome-c reductase activity
    		•  9.78686808279934 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor
    		•  9.78686808279934 bayes_pls_golite062009
  • electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity
    		•  7.65479843528878 bayes_pls_golite062009
  • oxidoreductase activity, acting on diphenols and related substances as donors
    		•  6.402093715172 bayes_pls_golite062009
  • electron carrier activity
    		•  5.89393941749361 bayes_pls_golite062009
  • oxidoreductase activity
    		•  4.80453374142732 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  3.95927872883558 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  3.81941996826271 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  3.28855051034616 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  3.12657801391409 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.97300461435278 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.64574194038684 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.51612623656281 bayes_pls_golite062009
  • electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity
    		•  1.96628396955281 bayes_pls_golite062009
  • binding
    		•  0.972223231507636 bayes_pls_golite062009
  • oxidoreductase activity, acting on peroxide as acceptor
    		•  0.95569494562262 bayes_pls_golite062009
  • peroxidase activity
    		•  0.95569494562262 bayes_pls_golite062009
  • antioxidant activity
    		•  0.72039892017668 bayes_pls_golite062009
  • protein binding
    		•  0.180623301978971 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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    Created and Maintained by: Michael Riffle