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Protein Overview: hnd-1

General Information:
Name(s) found: hnd-1 / CE05415 [WormBase]
Description(s) found:
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  • WBGene00001981 locus:hnd-1 status:Confirmed UniProt:Q18612 protein_id:CAA93634.1 [WormBase]
  • pir||T19921 hypothetical protein C44C10.8 - Caenorhabditis elegans [NCBI NR]
  • gi|3874976|emb|CAA93634.1| C. elegans protein C44C10.8, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17551010|ref|NP_509952.1| HAND bHLH transcription factor family member (hnd-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE05415 WBGene00001981 locus:hnd-1 Helix-loop-helix DNA-binding domain status:Partially_confirmed TR:Q18612 protein_id:CAA93634.1 [wormpep150.fasta]
  • 05415 WBGene00001981 locus:hnd-1 Helix-loop-helix DNA-binding domain status:Partially_confirmed TR:Q18612 protein_id:CAA93634.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • HAND bHLH transcription factor family (hnd-1) [Caenorhabditis elegans]gi|3874976|emb|CAA93634.1| Hypothetical protein C44C10.8 [Caenorhabditis elegans]gi|7497399|pir||T19921 hypothetical protein C44C10.8 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:hnd-1 Helix-loop-helix DNA-binding domain status:Partially_confirmed TR:Q18612 protein_id:CAA93634.1 [wormpep115.fasta.reversed]
  • CE05415 Helix-loop-helix DNA-binding domain status:Predicted TR:Q18612 protein_id:CAA93634.1 [wormpep80.hongbin]
  • CE05415 WBGene00001981 locus:hnd-1 Helix-loop-helix DNA-binding domain status:Partially_confirmed UniProt:Q18612_CAEEL protein_id:CAA93634.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05415 WBGene00001981 locus:hnd-1 Helix-loop-helix DNA-binding domain status:Partially_confirmed UniProt:Q18612_CAEEL protein_id:CAA93634.1| [wormORF-contam.fasta]
  • Hypothetical protein C44C10.8 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • HAND bHLH transcription factor family member (hnd-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE05415 WBGene00001981 locus:hnd-1 Helix-loop-helix DNA-binding domain status:Confirmed UniProt:Q18612 protein_id:CAA93634.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05415 WBGene00001981 locus:hnd-1 status:Confirmed UniProt:Q18612 protein_id:CAA93634.1 [wormpep246-ecoli-contam.fasta]
  • HAND bHLH transcription factor family OS=Caenorhabditis elegans GN=hnd-1 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: gonad development [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    regulation of transcription [IEALink to PubMed article]
    Molecular Function: transcription regulator activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSTTAGNN AVSSLESTDS KKSRKEKSRE KEHRRAQCIN SAFEILQQHI PYLKSEERKS  60
   61 LPKIKTLRLA MQYIDHLKKL LGGNEMLETD CNESRPLTHS DFRVNISNEI RIRNSYRERA 120
  121 HNQELDEATV KRILAREDQR RRCSSVPEGI QRYTPYQSRQ FGPISNNVCN FRHVDANQYN 180
  181 TNFMEYQTQM VQVANFPNQF SHEYYNYGTF PVIDPTSLEN SNPILQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..105] PSI-BLAST 13.522879 Myc prot-oncogene protein
    2 View Details [106..226] MSA 1.460994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.04189889011459 bayes_pls_golite062009
  • DNA binding
    		•  1.57198412842008 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.51367486803231 bayes_pls_golite062009
  • transcription factor activity
    		•  1.48896865387791 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.33109239768995 bayes_pls_golite062009
  • protein binding
    		•  0.90375176425983 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle