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Protein Overview: CE05244

General Information:
Name(s) found: CE05244 [WormBase]
Description(s) found:
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  • WBGene00007428 locus:wdr-20 status:Partially_confirmed UniProt:Q17818 protein_id:CAA96589.1 [WormBase]
  • pir||T19080 hypothetical protein C08B6.7 - Caenorhabditis elegans [NCBI NR]
  • gi|3874143|emb|CAA96589.1| C. elegans protein C08B6.7, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17557750|ref|NP_505605.1| hypothetical protein C08B6.7 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE05244 WBGene00007428 59 protein status:Partially_confirmed TR:Q17818 protein_id:CAA96589.1 [wormpep150.fasta]
  • 05244 WBGene00007428 59 protein status:Partially_confirmed TR:Q17818 protein_id:CAA96589.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • WD repeat domain 20 (5K612) [Caenorhabditis elegans]gi|3874143|emb|CAA96589.1| Hypothetical protein C08B6.7 [Caenorhabditis elegans]gi|7495657|pir||T19080 hypothetical protein C08B6.7 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • 59 protein status:Partially_confirmed TR:Q17818 protein_id:CAA96589.1 [wormpep115.fasta.reversed]
  • CE05244 59 protein status:Partially_confirmed TR:Q17818 protein_id:CAA96589.1 [wormpep80.hongbin]
  • CE05244 WBGene00007428 59 protein status:Partially_confirmed UniProt:Q17818_CAEEL protein_id:CAA96589.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05244 WBGene00007428 59 protein status:Partially_confirmed UniProt:Q17818_CAEEL protein_id:CAA96589.1| [wormORF-contam.fasta]
  • Hypothetical protein C08B6.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • C08B6.7 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE05244 WBGene00007428 59 protein status:Partially_confirmed UniProt:Q17818 protein_id:CAA96589.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05244 WBGene00007428 locus:hpo-22 59 protein status:Partially_confirmed UniProt:Q17818 protein_id:CAA96589.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE05244 WBGene00007428 locus:wdr-20 status:Partially_confirmed UniProt:D9N129 protein_id:CAA96589.1 [wormpep246-ecoli-contam.fasta]
  • CE05244 WBGene00007428 locus:wdr-20 status:Partially_confirmed UniProt:D9N129 protein_id:CAA96589.1 WD repeat-containing protein 20 homolog [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
  • Isoform of D9N129, Isoform a of WD repeat-containing protein 20 homolog OS=Caenorhabditis elegans GN=wdr-20 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 750 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: oogenesis [IMP]
    embryonic development ending in birth or egg hatching [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHQHMLGPST SLGGTNNSAL QSSVLSEGVL LSHSQPTREE IKKNFETREG VYRSVPSAEF  60
   61 SRPRPLPQYH MPPGIASAAA SQIAAAGSTV RVSFLNGAEK SVESPEAVAP TSSTYEHHKN 120
  121 EPNGARIDMV DEAQADKICF NVGKELYVFS YRGTQTETDL SRPIDKRVYK GTSPTYHAFN 180
  181 QESAKNGSCQ LLIGFTLGQL QIIDPLEKSS SSPFSRLYNE DRYIEKTSVT CIRWLPGDSN 240
  241 IFLASYVSGN LYVYDQRISA ASSNNNGSSQ PPPWTIHKEG DKFAIHTWKG KVQRNPVTRW 300
  301 QIGEGSIHQF SFSGSDGKMM ATVSHDGFLR IFNYHAQELL AVMKSYFGGL LTLSWSPDAK 360
  361 LIATGGEDDL LTVYSVAEKR VVCRGQAHKS WVSQVKFDPY LCTTEEDLEN NGIAMTSTFD 420
  421 DVAKDFSIRS GPVPSTSADL NSGVMNATST FSRCSLASFN TINGAPAGNS VRYRIGSVGH 480
  481 DTFLCLWDIT EDMLNQGNIR RHRNSTIIAP MTTLEVQTNS LVGRLEDLQE VSPGGAGVNA 540
  541 SSDSQSITNN HTTPRPEKQK KKKFTKRLGF SKFTSGSSSA TSNPVGGHKI GTLMNGASVN 600
  601 SESSKKQNPG LISQISCCNE TRMLGSKFCP GIRDVPMIEP LMCKKVSHDR LTVLEFREDC 660
  661 VVTACQEGYI CTWGRPGRYQ PKRDCINSPG TASPESGQKP SGSTSAMTSS YGYGSDALNG 720
  721 VPPSRSSSTY SNTASTSVYH RPTYAWQNAN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..120] PSI-BLAST 26.0 No description for 2pm9A was found.
    2 View Details [121..750] PSI-BLAST 43.69897 Actin interacting protein 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.04720267788917 bayes_pls_golite062009
  • protein binding
    		•  0.0109071915022965 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle