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Protein Overview: egl-13

General Information:
Name(s) found: egl-13 / CE05030 [WormBase]
Description(s) found:
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  • WBGene00001182 locus:egl-13 status:Confirmed UniProt:H2L0M3 protein_id:CCD74410.1 [WormBase]
  • gi|7508761|pir||T26043 hypothetical protein W01C8.2 - Caenorhabditis elegans [NCBI NR]
  • gi|71996918|ref|NP_001024921.1| EGg Laying defective family member (egl-13) [Caenorhabditis elegans] [NCBI NR]
  • gi|62630014|gb|AAX88815.1| Egg laying defective protein 13, isoform d [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • hypothetical protein W01C8.2 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE05030 WBGene00001182 locus:egl-13 status:Confirmed TR:Q4PIT3 protein_id:AAX88815.1 [wormpep150.fasta]
  • 05030 WBGene00001182 locus:egl-13 status:Confirmed TR:Q4PIT3 protein_id:AAX88815.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • CE05030 WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q4PIT3_CAEEL protein_id:AAX88815.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE05030 WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q4PIT3_CAEEL protein_id:AAX88815.1| [wormORF-contam.fasta]
  • EGg Laying defective family member (egl-13) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Egg laying defective protein 13, isoform d [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE05030 WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q4PIT3 protein_id:AAX88815.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE05030 WBGene00001182 locus:egl-13 status:Confirmed UniProt:H2L0M3 protein_id:CCD74410.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE05030 WBGene00001182 locus:egl-13 status:Confirmed UniProt:Q23045 protein_id:CCD74410.1 Transcription factor egl-13 [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
  • Isoform of Q23045, Isoform d of Transcription factor egl-13 OS=Caenorhabditis elegans GN=egl-13 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 319 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Biological Process: vulval development [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    oviposition [IMPLink to PubMed article]
    anatomical structure morphogenesis [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    plasma membrane fusion [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    transcription factor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPMVQMLHA GNFDSEMLLR QHELMQHQQQ QMIIANMLKA TQSLPLLFNG GLNYEAILNN  60
   61 PVLNATIAGH LPNPLASNIS LLQKSISAKL AAAGNMQTVE KVETPLNLSK DTPSPTAIPQ 120
  121 SPLSGFRLPY SLGTNYGSDG QLFNNCSPNS SGKSTPGNTS VTSEVATPRP QAKSPNHIKR 180
  181 PMNAFMVWAR DERRKILKAY PDMHNSNISK ILGSRWKGMS NSEKQPYYEE QSRLSKLHME 240
  241 QHPDYRYRPR PKRTCVIDGK KVRVNEYKTI MKTKKDLMWG DEPGFSQPSD LQMDLASHVN 300
  301 LLNDLTQHHH QSHLLQTAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..170] MSA 6.290997 View MSA. No confident structure predictions are available.
    2 View Details [171..319] PSI-BLAST 35.154902 No description for 2gzkA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.927928103499335 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.38664561645052 bayes_pls_golite062009
  • DNA binding
    		•  0.37554038880732 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle