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View Structure Prediction Details

Protein: egl-13
Organism: Caenorhabditis elegans
Length: 319 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for egl-13.

Description E-value Query
Range
Subject
Range
egl-13 - status:Confirmed UniProt:Q4PIT4 protein_id:AAX88814.1
233.0 [0..4] [319..107]

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Predicted Domain #1
Region A:
Residues: [1-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPMVQMLHA GNFDSEMLLR QHELMQHQQQ QMIIANMLKA TQSLPLLFNG GLNYEAILNN  60
   61 PVLNATIAGH LPNPLASNIS LLQKSISAKL AAAGNMQTVE KVETPLNLSK DTPSPTAIPQ 120
  121 SPLSGFRLPY SLGTNYGSDG QLFNNCSPNS SGKSTPGNTS VTSEVATPRP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [171-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QAKSPNHIKR PMNAFMVWAR DERRKILKAY PDMHNSNISK ILGSRWKGMS NSEKQPYYEE  60
   61 QSRLSKLHME QHPDYRYRPR PKRTCVIDGK KVRVNEYKTI MKTKKDLMWG DEPGFSQPSD 120
  121 LQMDLASHVN LLNDLTQHHH QSHLLQTAE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.154902
Match: 2gzkA
Description: No description for 2gzkA was found.

Predicted functions:

Term Confidence Notes
binding 0.927928103499335 bayes_pls_golite062009
nucleic acid binding 0.38664561645052 bayes_pls_golite062009
DNA binding 0.37554038880732 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle