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Protein Overview: CE04479

General Information:
Name(s) found: CE04479 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00017993 locus:cec-5 status:Confirmed UniProt:Q19973 protein_id:CCD70437.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 374 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    chromatin [IEALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    chromatin assembly or disassembly [IEALink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    Molecular Function: chromatin binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKSSGSAP SRASGRSGKQ TTHFQVVHDA TKHRAKRSKS SKSGDSKSSS QDASVKKILD  60
   61 HKLFNTHYVE YNVLLSNGRK MMATEFDFEG KKEQKLLADY KYKITNQDDD PDEDFAVEKI 120
  121 IAHRFSGKKN KPLFLVMWRG YPNPVSHSEM WENELSNCKD LLEAYKDSHD MKPPPVKKSN 180
  181 KKKGSKKSPK KSAKSKDDDS SDEEEEEEVK EKSPKKSSKS TKRAASDDDE EEEPVATKKS 240
  241 KKSKRAETPE EEDDEEEEVV KTPKKTKKSK RAETPEEEDE VEEEVVKTPK KSKSSKSPKK 300
  301 SKRAETSDEE DEDEEDEKEA PKSSKKQEKA KSSKRVAEDS GNEEEDQDNT SGSGSEGEEE 360
  361 EEEASSNGKR KSRH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] deduced N/A No confident structure predictions are available.
    2 View Details [105..173] FFAS03 3.81 Histone methyltransferase clr4, chromo domain
    3 View Details [174..374] PSI-BLAST 3.30103 Solution Structure of Choline Binding Protein A, Domain R2, the Major Adhesin of Streptococcus pneumoniae

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.268337333010953 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle