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Protein Overview: vps-45

General Information:
Name(s) found: vps-45 / CE04214 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00016643 locus:vps-45 status:Confirmed UniProt:H2KYN0 protein_id:CCD63972.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 547 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: vesicle-mediated transport [IEALink to PubMed article]
    vesicle docking during exocytosis [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVQSSRKL IQDMIQLAGS QMKLLLMDGE TTPTVSCAFA QSEVMQKEVY IFDRIENKTS  60
   61 SENIKNLKCV VFVRPTPKNI ERLVKELQEP RFSQYYLYFT NTINKYDVKR LAEADKNETV 120
  121 REVQEVFLDG VPIRKDLFTL NLTHIFDSSF TLKEEAAERI KCGIIALLLQ LKKAPAVRYQ 180
  181 KSSPSCKKVA DDVAQFIRRE NGLFENSRAD TTLLIIERSQ DAVTPLLNQW TYEAMIHEML 240
  241 TLTNNRCTCT DQNIVLSELH DEFFARNITA NFGEIGQNIK TLISEFQEKK HINKNLESIQ 300
  301 DMKKFVEDYP QFKKISGTVS KHVSLVGELS NLVQKHNLLG VSEVEQAIVS DGDHGKCINL 360
  361 VRGLLKNTKT REVDIIRLVL LYALRFENAP GNELNSLISQ LRPQHPKIHQ TVSTLLKYGG 420
  421 LSRRPADLFG GESTIDITKR FIKGLKGVEN IYTQHSPYLK NMIESCQRGR LDNYPLLSNE 480
  481 CDRMDNIIVF IVGGATYEEA AYVRSLNEKR MQGYGGPAVV LAGSSMLNTK SFLEEFANVD 540
  541 KNTGAVH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..547] PSI-BLAST 127.0 Neuronal Sec1, NSec1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNARE binding
    		•  4.56428593085019 bayes_pls_golite062009
  • syntaxin binding
    		•  3.46044132736061 bayes_pls_golite062009
  • binding
    		•  2.7837022903231 bayes_pls_golite062009
  • protein binding
    		•  2.77285532000616 bayes_pls_golite062009
  • syntaxin-1 binding
    		•  0.269372794919901 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle