| Protein: | vps-45 |
| Organism: | Caenorhabditis elegans |
| Length: | 547 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps-45.
| Description | E-value | Query Range |
Subject Range |
|
|
482.0 | [0..1] | [537..1] |
|
Region A: Residues: [1-547] |
1 11 21 31 41 51
| | | | | |
1 MDLVQSSRKL IQDMIQLAGS QMKLLLMDGE TTPTVSCAFA QSEVMQKEVY IFDRIENKTS 60
61 SENIKNLKCV VFVRPTPKNI ERLVKELQEP RFSQYYLYFT NTINKYDVKR LAEADKNETV 120
121 REVQEVFLDG VPIRKDLFTL NLTHIFDSSF TLKEEAAERI KCGIIALLLQ LKKAPAVRYQ 180
181 KSSPSCKKVA DDVAQFIRRE NGLFENSRAD TTLLIIERSQ DAVTPLLNQW TYEAMIHEML 240
241 TLTNNRCTCT DQNIVLSELH DEFFARNITA NFGEIGQNIK TLISEFQEKK HINKNLESIQ 300
301 DMKKFVEDYP QFKKISGTVS KHVSLVGELS NLVQKHNLLG VSEVEQAIVS DGDHGKCINL 360
361 VRGLLKNTKT REVDIIRLVL LYALRFENAP GNELNSLISQ LRPQHPKIHQ TVSTLLKYGG 420
421 LSRRPADLFG GESTIDITKR FIKGLKGVEN IYTQHSPYLK NMIESCQRGR LDNYPLLSNE 480
481 CDRMDNIIVF IVGGATYEEA AYVRSLNEKR MQGYGGPAVV LAGSSMLNTK SFLEEFANVD 540
541 KNTGAVH
|
| Detection Method: |  |
| Confidence: | 127.0 |
| Match: | 1epuA |
| Description: | Neuronal Sec1, NSec1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNARE binding | 4.56428593085019 | bayes_pls_golite062009 |
| syntaxin binding | 3.46044132736061 | bayes_pls_golite062009 |
| binding | 2.7837022903231 | bayes_pls_golite062009 |
| protein binding | 2.77285532000616 | bayes_pls_golite062009 |
| syntaxin-1 binding | 0.269372794919901 | bayes_pls_golite062009 |
