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Protein Overview: crn-4

General Information:
Name(s) found: crn-4 / CE03858 [WormBase]
Description(s) found:
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  • WBGene00000797 locus:crn-4 Cell death-related nuclease 4 status:Confirmed UniProt:Q10905 protein_id:CCD61184.1 [WormBase]
  • pir||T30086 hypothetical protein AH9.2 - Caenorhabditis elegans [NCBI NR]
  • gi|31747257|gb|AAP57300.1| cell death-related nuclease 4 [Caenorhabditis elegans] [NCBI NR]
  • gi|2496805|sp|Q10905.1|CRN4_CAEEL RecName: Full=Cell death-related nuclease 4; Flags: Precursor [NCBI NR]
  • gi|17548214|ref|NP_508415.1| Cell-death-Related Nuclease family member (crn-4) [Caenorhabditis elegans] [NCBI NR]
  • gi|1086852|gb|AAA82440.1| Hypothetical protein AH9.2 [Caenorhabditis elegans] [NCBI NR]
  • Cell death-related nuclease 4 OS=Caenorhabditis elegans GN=crn-4 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE03858 WBGene00000797 locus:crn-4 status:Confirmed SW:Q10905 protein_id:AAA82440.1 [wormpep150.fasta]
  • 03858 WBGene00000797 locus:crn-4 status:Confirmed SW:Q10905 protein_id:AAA82440.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • prion protein interacting 1 like (XC876) [Caenorhabditis elegans]gi|31747257|gb|AAP57300.1| cell death-related nuclease 4 [Caenorhabditis elegans]gi|1086852|gb|AAA82440.1| Cell-death-related nuclease protein 4 [Caenorhabditis elegans]gi|7494691|pir||T3 [nrdb_11152004_Chlamydomonas]
  • locus:crn-4 status:Confirmed SW:Q10905 protein_id:AAA82440.1 [wormpep115.fasta.reversed]
  • CE03858 status:Predicted SW:Q10905 protein_id:AAA82440.1 [wormpep80.hongbin]
  • CE03858 WBGene00000797 locus:crn-4 status:Confirmed UniProt:Q10905 protein_id:AAA82440.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03858 WBGene00000797 locus:crn-4 status:Confirmed UniProt:Q10905 protein_id:AAA82440.1| [wormORF-contam.fasta]
  • Cell death-related nuclease 4 precursor [nr-271106-contam.fasta]
  • cell death-related nuclease 4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Cell-death-Related Nuclease family member (crn-4) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Cell-death-related nuclease protein 4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03858 WBGene00000797 locus:crn-4 status:Confirmed UniProt:Q10905 protein_id:CCD61184.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE03858 WBGene00000797 locus:crn-4 status:Confirmed UniProt:Q10905 protein_id:CCD61184.1 Cell death-related nuclease 4 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 298 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: DNA fragmentation involved in apoptosis [IDALink to PubMed article][IGILink to PubMed article]
    Molecular Function: 3'-5' exonuclease activity [ISSLink to PubMed article]
    exonuclease activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQHCPFDT LLILDFETTS DAANQDYPCE VIQFAIVAYD VPNDKIREDI SFNKYVKPVL  60
   61 NRTLTKNCVD FTGIPQRSID TADTFDVVYE QFQQWLITLG LEEGKFAFVC DSRQDLWRIA 120
  121 QYQMKLSNIQ MPAFFRQYIN LYKIFTNEMD RMGPKELSAT TNIGKMNEYY DLPTIGRAHD 180
  181 AMDDCLNIAT ILQRMINMGA KVTVNELLTC CASWRRQPLV YNKEWRSSFM DAGKIFERVL 240
  241 PLVVTTIRAG DFRLEMYGVC RYCRKGMDVC GTSHQQTPHD LYKNEEDPIH FAKIAGYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..215] PSI-BLAST 34.69897 No description for 1zbuA was found.
    2 View Details [216..298] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle