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View Structure Prediction Details

Protein: crn-4
Organism: Caenorhabditis elegans
Length: 298 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crn-4.

Description E-value Query
Range
Subject
Range
gi|157768977 - gi|157768977|ref|XP_001676309.1| Hypothetical protein CBG14049 [Caenorhabditis briggsae AF16]
gi|187027645, gi... - gi|39597639|emb|CAE68330.1| Hypothetical protein CBG14049 [Caenorhabditis briggsae], gi|187027645|em...
292.0 [0..1] [298..1]
eri-1 - status:Partially_confirmed UniProt:O44406 protein_id:AAK39277.2
185.0 [0..8] [263..148]

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Predicted Domain #1
Region A:
Residues: [1-215]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYQHCPFDT LLILDFETTS DAANQDYPCE VIQFAIVAYD VPNDKIREDI SFNKYVKPVL  60
   61 NRTLTKNCVD FTGIPQRSID TADTFDVVYE QFQQWLITLG LEEGKFAFVC DSRQDLWRIA 120
  121 QYQMKLSNIQ MPAFFRQYIN LYKIFTNEMD RMGPKELSAT TNIGKMNEYY DLPTIGRAHD 180
  181 AMDDCLNIAT ILQRMINMGA KVTVNELLTC CASWR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1zbuA
Description: No description for 1zbuA was found.

Predicted Domain #2
Region A:
Residues: [216-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQPLVYNKEW RSSFMDAGKI FERVLPLVVT TIRAGDFRLE MYGVCRYCRK GMDVCGTSHQ  60
   61 QTPHDLYKNE EDPIHFAKIA GYY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle