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Protein Overview: CE03821

General Information:
Name(s) found: CE03821 [WormBase]
Description(s) found:
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  • WBGene00013983 Probable ATP-dependent RNA helicase DDX55 homolog status:Partially_confirmed UniProt:P34640 protein_id:CAA80151.1 [WormBase]
  • gi|3881691|emb|CAA80151.1| C. elegans protein ZK512.2, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • pir||B88549 protein ZK512.2 [imported] - Caenorhabditis elegans [NCBI NR]
  • gi|17556951|ref|NP_499025.1| hypothetical protein ZK512.2 [Caenorhabditis elegans] [NCBI NR]
  • gi|1353121|sp|P34640.2|DDX55_CAEEL RecName: Full=Probable ATP-dependent RNA helicase DDX55 homolog; AltName: Full=DEAD box protein 55 [NCBI NR]
  • (P34640) Putative ATP-dependent RNA helicase ZK512.2 (EC 3.6.1.-) [Swiss-Prot]
  • Probable ATP-dependent RNA helicase DDX55 homolog OS=Caenorhabditis elegans GN=ZK512.2 PE=3 SV=2 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE03821 WBGene00013983 RNA helicase status:Partially_confirmed SW:P34640 protein_id:CAA80151.1 [wormpep150.fasta]
  • 03821 WBGene00013983 RNA helicase status:Partially_confirmed SW:P34640 protein_id:CAA80151.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • rna helicase (65.8 kD) (3K232) [Caenorhabditis elegans]gi|3881691|emb|CAA80151.1| Hypothetical protein ZK512.2 [Caenorhabditis elegans]gi|25395904|pir||B88549 protein ZK512.2 [imported] - Caenorhabditis elegansgi|1353121|sp|P34640|YOQ2_CAEEL Putative A [nrdb_11152004_Chlamydomonas]
  • RNA helicase status:Partially_confirmed SW:P34640 protein_id:CAA80151.1 [wormpep115.fasta.reversed]
  • CE03821 RNA helicase status:Partially_confirmed SW:P34640 protein_id:CAA80151.1 [wormpep80.hongbin]
  • CE03821 WBGene00013983 RNA helicase status:Partially_confirmed UniProt:P34640 protein_id:CAA80151.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03821 WBGene00013983 RNA helicase status:Partially_confirmed UniProt:P34640 protein_id:CAA80151.1| [wormORF-contam.fasta]
  • Hypothetical protein ZK512.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • ZK512.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Probable ATP-dependent RNA helicase DDX55 homolog (DEAD box protein 55) [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03821 WBGene00013983 status:Partially_confirmed UniProt:P34640 protein_id:CAA80151.1 Probable ATP-dependent RNA helicase DDX55 homolog [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 578 amino acids

    Gene Ontology:
    Cellular Component: membrane [IEALink to PubMed article]
    Biological Process: positive regulation of growth rate [IMPLink to PubMed article]
    DNA recombination [IEALink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    ATP binding [IEALink to PubMed article]
    ATP-dependent helicase activity [IEALink to PubMed article]
    helicase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKVGPVAL KTFREKLGPE LLEVFDKSYK SFTDVQVLSG THLLNLSDVV VESPTGSGKT  60
   61 LAFVLPMMRM IQNAKLQPAD IGALILSPSR ELCSQIVSVI QPFAEKLNLT VETVTGGQKV 120
  121 DKNIKMFKNK NVNILVATPG RLFQIIQHEK TLIARKMRTL QLLVIDEADR FNEIQFEDHM 180
  181 REILSCIPKQ RRTGLFSATQ VKEEDDLMVF GLRNAKQVKV AQERNSAAPS TLKNYYVECR 240
  241 ADEKTSVCLE FIRQRTDKKI LIFFPSCNSV RYFYKIFERC LGKRPLFAVH GKCSNPHRAS 300
  301 QIKAFSDSTN GVMISTDVMA RGIDISDIDW VIQFDLPKHS SWFVHRAGRT ARCGREGNAL 360
  361 ILIASEQLAY VNFLDNHEKV KLDEIKVPTN NSRKSEELRQ KMIKIQVSDR AILEAGTRAF 420
  421 VSHVESYAKH DCHLICSLDD LNVVGLANSY ALLRLPKMRE LSQRKDLDMF DRSAIETSEI 480
  481 KYADVKLEAN RETVMKEKHE KKVETLAAKD KKRREKEARK LKKMGGRFRN GGGTGRKAEE 540
  541 KKALKRKAEE EDDAQNDIRL LKRIKRGKLS KKEIKDVL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..388] PSI-BLAST 81.69897 No description for 2hxyA was found.
    2 View Details [389..468] PSI-BLAST 18.69897 Nucleotide excision repair enzyme UvrB
    3 View Details [469..578] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle