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Protein Overview: CE03726

General Information:
Name(s) found: CE03726 [WormBase]
Description(s) found:
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  • WBGene00012000 Putative transcription elongation factor S-II status:Partially_confirmed UniProt:P52652 protein_id:CAA90943.1 [WormBase]
  • pir||T25250 hypothetical protein T24H10.1 - Caenorhabditis elegans [NCBI NR]
  • gi|3880168|emb|CAA90943.1| C. elegans protein T24H10.1, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17536493|ref|NP_495941.1| hypothetical protein T24H10.1 [Caenorhabditis elegans] [NCBI NR]
  • gi|1729914|sp|P52652.1|TFS2_CAEEL RecName: Full=Putative transcription elongation factor S-II; AltName: Full=TFIIS [NCBI NR]
  • Putative transcription elongation factor S-II OS=Caenorhabditis elegans GN=T24H10.1 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE03726 WBGene00012000 transcription factor S-II status:Partially_confirmed SW:P52652 protein_id:CAA90943.1 [wormpep150.fasta]
  • 03726 WBGene00012000 transcription factor S-II status:Partially_confirmed SW:P52652 protein_id:CAA90943.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • transcription elongation factor (2J391) [Caenorhabditis elegans]gi|3880168|emb|CAA90943.1| Hypothetical protein T24H10.1 [Caenorhabditis elegans]gi|7508405|pir||T25250 hypothetical protein T24H10.1 - Caenorhabditis elegansgi|1729914|sp|P52652|TFS2_CAEE [nrdb_11152004_Chlamydomonas]
  • transcription factor S-II status:Partially_confirmed SW:P52652 protein_id:CAA90943.1 [wormpep115.fasta.reversed]
  • CE03726 transcription factor S-II status:Partially_confirmed SW:P52652 protein_id:CAA90943.1 [wormpep80.hongbin]
  • CE03726 WBGene00012000 transcription factor S-II status:Partially_confirmed UniProt:TFS2_CAEEL protein_id:CAA90943.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03726 WBGene00012000 transcription factor S-II status:Partially_confirmed UniProt:TFS2_CAEEL protein_id:CAA90943.1| [wormORF-contam.fasta]
  • Hypothetical protein T24H10.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Putative transcription elongation factor S-II (TFIIS) [nr-271106-contam.fasta]
  • T24H10.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE03726 WBGene00012000 transcription factor S-II status:Partially_confirmed UniProt:P52652 protein_id:CAA90943.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03726 WBGene00012000 status:Partially_confirmed UniProt:P52652 protein_id:CAA90943.1 Putative transcription elongation factor S-II [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 308 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: transcription [IEALink to PubMed article]
    RNA elongation [IEALink to PubMed article]
    regulation of transcription, DNA-dependent [IEALink to PubMed article]
    regulation of transcription [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    DNA binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]
    DNA-directed RNA polymerase activity [IEALink to PubMed article]
    RNA polymerase II transcription factor activity [IEALink to PubMed article]
    translation elongation factor activity [IEALink to PubMed article]
    transcription regulator activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALEETQSL CKQVDDICNN GMESVEQCNK LLDQLSKIPM SIEIIQKTNI GIKVNMMRKK  60
   61 VTDDAVAKRA KNIIKDWKNV VDGKSKSQDD GGAPPAKKHR KESVEEAKPE KKKIEAPYKR 120
  121 PEPSSRPEIV AQFASASFPP KHLENDETRL KSAQLLLSAL RFGDMPQGTL DPEELAVQIE 180
  181 EKLYSVHRDT NKSYSAAVRS RIFNLRDKKN LALRENVLTG VVRAEKFATM TSEEMASAEI 240
  241 REMRDKFTKE AILEHQMSVQ QGTPSDMFKC GKCGKKNCTY TQLQTRSSDE PMTTFVFCLE 300
  301 CGNRWKFC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..308] PSI-BLAST 42.221849 RNA polymerase II-TFIIS complex


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle