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Protein Overview: CE03398

General Information:
Name(s) found: CE03398 [WormBase]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • WBGene00009944 Uncharacterized protein F52H3.2 status:Confirmed UniProt:Q20680 protein_id:CAA91322.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 638 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA processing [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    Molecular Function: FAD binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKSTRLLR RCFQTDVDVI VIGGGHAGCE SAAAAARCGS NTVLVTQNKN TIGEMSCNPS  60
   61 FGGIGKGHLI REVDALDGLC ARICDKSAIT YQALNRAQGP AVLGLRAQID RKLYKTQMQN 120
  121 EINSTKRLEI LEGEVAELLV ENGKIVGIRM MNETVIRTKC VVITTGTFLR AQIYQGMKTW 180
  181 PAGRIGEKSS DRLSESFLKH GFELGRLRTG TPPRLMKDSI NFSKFERVAP DRTPIPFSFL 240
  241 TKNVWISYED QLPTYLGHTN DEVCRIGNEN MHENYQVASE TTSPRYCPSL ESKLLRFPKL 300
  301 HHRLFLEHEG LDSPHIYPQG MSLTFKPEVQ TQLLRAIPGL ENVEIFQPGY GVQYDFVNPK 360
  361 QLKRTLETRK VEGMFLAGQI NGTTGYEEAA AQGVVAGINA SARAQNEPGM EVSRTEGYIG 420
  421 VLIDDLTSLG TNEPYRMLTS RAEFRLYLRP DNADIRLTEL GRRHNAISDN RWAIFTETKG 480
  481 ELNNLTQRTE EMKMSMVKWK RIIPKLAATS RNDGKVLSAF DLIHRYDLDK SDLELCLKDK 540
  541 NIGEDILERL KIEGRYQMEH ERMKAKKQEI DRESATAIPD NTDFSTMRGM SLECIEKLER 600
  601 ARPRNLAAAT RISGITPEAI VVLMRHLKNP APVRSSAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..408] PSI-BLAST 27.221849 No description for 2gqfA was found.
    2 View Details [409..466] MSA 2.239993 View MSA. No confident structure predictions are available.
    3 View Details [467..638] MSA 2.186968 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity
    		•  4.24087829378489 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  2.84060092432585 bayes_pls_golite062009
  • catalytic activity
    		•  1.56773888754354 bayes_pls_golite062009
  • antioxidant activity
    		•  1.49429830917872 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors
    		•  1.39990343076756 bayes_pls_golite062009
  • oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor
    		•  1.14701726867934 bayes_pls_golite062009
  • binding
    		•  0.400596507621048 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  0.36771673037999 bayes_pls_golite062009
  • dihydrolipoyl dehydrogenase activity
    		•  0.187016999137115 bayes_pls_golite062009
  • protein binding
    		•  0.139858531143419 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.73

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle