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View Structure Prediction Details

Protein: CE03398
Organism: Caenorhabditis elegans
Length: 638 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE03398.

Description E-value Query
Range
Subject
Range
MNMG_VIBPA - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Vibrio parahaemolyticus serotype...
GIDA_VIBPA, MNMG... - tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG OS=Vibrio parahaemolyticus GN=mnmG ...
766.0 [0..13] [635..3]

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Predicted Domain #1
Region A:
Residues: [1-408]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSKSTRLLR RCFQTDVDVI VIGGGHAGCE SAAAAARCGS NTVLVTQNKN TIGEMSCNPS  60
   61 FGGIGKGHLI REVDALDGLC ARICDKSAIT YQALNRAQGP AVLGLRAQID RKLYKTQMQN 120
  121 EINSTKRLEI LEGEVAELLV ENGKIVGIRM MNETVIRTKC VVITTGTFLR AQIYQGMKTW 180
  181 PAGRIGEKSS DRLSESFLKH GFELGRLRTG TPPRLMKDSI NFSKFERVAP DRTPIPFSFL 240
  241 TKNVWISYED QLPTYLGHTN DEVCRIGNEN MHENYQVASE TTSPRYCPSL ESKLLRFPKL 300
  301 HHRLFLEHEG LDSPHIYPQG MSLTFKPEVQ TQLLRAIPGL ENVEIFQPGY GVQYDFVNPK 360
  361 QLKRTLETRK VEGMFLAGQI NGTTGYEEAA AQGVVAGINA SARAQNEP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.221849
Match: 2gqfA
Description: No description for 2gqfA was found.

Predicted functions:

Term Confidence Notes
oxidoreductase activity 4.24087829378489 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 2.84060092432585 bayes_pls_golite062009
catalytic activity 1.56773888754354 bayes_pls_golite062009
antioxidant activity 1.49429830917872 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 1.39990343076756 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor 1.14701726867934 bayes_pls_golite062009
binding 0.400596507621048 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 0.36771673037999 bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity 0.187016999137115 bayes_pls_golite062009
protein binding 0.139858531143419 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [409-466]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GMEVSRTEGY IGVLIDDLTS LGTNEPYRML TSRAEFRLYL RPDNADIRLT ELGRRHNA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [467-638]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISDNRWAIFT ETKGELNNLT QRTEEMKMSM VKWKRIIPKL AATSRNDGKV LSAFDLIHRY  60
   61 DLDKSDLELC LKDKNIGEDI LERLKIEGRY QMEHERMKAK KQEIDRESAT AIPDNTDFST 120
  121 MRGMSLECIE KLERARPRNL AAATRISGIT PEAIVVLMRH LKNPAPVRSS AV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle