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Protein Overview: cpf-1

General Information:
Name(s) found: cpf-1 / CE03274 [WormBase]
Description(s) found:
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  • WBGene00000773 locus:cpf-1 status:Confirmed UniProt:Q19864 protein_id:CAA92670.1 [WormBase]
  • pir||T21482 hypothetical protein F28C6.3 - Caenorhabditis elegans [NCBI NR]
  • gi|3876353|emb|CAA92670.1| C. elegans protein F28C6.3, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17533535|ref|NP_495822.1| Cleavage and Polyadenylation Factor family member (cpf-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE03274 WBGene00000773 locus:cpf-1 cleavage stimulation factor like status:Partially_confirmed TR:Q19864 protein_id:CAA92670.1 [wormpep150.fasta]
  • 03274 WBGene00000773 locus:cpf-1 cleavage stimulation factor like status:Partially_confirmed TR:Q19864 protein_id:CAA92670.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • cleavage and Polyadenylation Factor (cpf-1) [Caenorhabditis elegans]gi|3876353|emb|CAA92670.1| Hypothetical protein F28C6.3 [Caenorhabditis elegans]gi|7500058|pir||T21482 hypothetical protein F28C6.3 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:cpf-1 cleavage stimulation factor like status:Partially_confirmed TR:Q19864 protein_id:CAA92670.1 [wormpep115.fasta.reversed]
  • CE03274 cleavage stimulation factor like status:Partially_confirmed TR:Q19864 protein_id:CAA92670.1 [wormpep80.hongbin]
  • CE03274 WBGene00000773 locus:cpf-1 cleavage stimulation factor like status:Partially_confirmed UniProt:Q19864_CAEEL protein_id:CAA92670.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03274 WBGene00000773 locus:cpf-1 cleavage stimulation factor like status:Partially_confirmed UniProt:Q19864_CAEEL protein_id:CAA92670.1| [wormORF-contam.fasta]
  • Cleavage and Polyadenylation Factor family member (cpf-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F28C6.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE03274 WBGene00000773 locus:cpf-1 cleavage stimulation factor like status:Partially_confirmed UniProt:Q19864 protein_id:CAA92670.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03274 WBGene00000773 locus:cpf-1 cleavage stimulation factor like status:Confirmed UniProt:Q19864 protein_id:CAA92670.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE03274 WBGene00000773 locus:cpf-1 status:Confirmed UniProt:Q19864 protein_id:CAA92670.1 [wormpep246-ecoli-contam.fasta]
  • Cleavage and Polyadenylation Factor OS=Caenorhabditis elegans GN=cpf-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 430 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    gastrulation with mouth forming first [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPDIKDREY MYRLIIGQLF YDGHQQIAVN LANTLGCSAP APPPSDKLFR LVTIAKQFVE  60
   61 DPDYKAEEKS SPMQFEPVSS GLDLEYDADV QPVSSEPSEY ETIYLTVHKA PCRAAAFNSD 120
  121 GSLVATGSAD CSIKIMDVER ILAREKEHRE MNENGPDAHH PVIRTLYDHV DDVNTVIFHP 180
  181 RDSILISGSN DKTVKLFDFS KTAVKKAMKT LSEVYPVRAL SCHPGGEFLL VATDHPTVRL 240
  241 YNIETAQAYA SANPDDQHTE SVTDVHYSEN ARLYVTASKD GHVKIWDGVS NRCVETFKRA 300
  301 HDGSSICSAK FTKNGKYILT SGMDSIVKLW ELSTNRCLIV YTGAGATGAQ DFATNASFNH 360
  361 NEDYVLFPDE KSGSMCSWDA RNSDRKRLLA LGHTSACRTF VHSPSMPAFM TGSDDHRARF 420
  421 WYRKPATNEH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..98] PSI-BLAST 68.522879 PAF-AH Holoenzyme: Lis1/Alfa2
    2 View Details [99..430] PSI-BLAST 74.045757 No description for 2gnqA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle