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Protein Overview: cfim-2

General Information:
Name(s) found: cfim-2 / CE03094 [WormBase]
Description(s) found:
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  • WBGene00008362 locus:cfim-2 status:Confirmed UniProt:Q18937 protein_id:CAA92294.2 [WormBase]
  • gi|32566005|ref|NP_501551.2| hypothetical protein D1046.1 [Caenorhabditis elegans] [NCBI NR]
  • gi|26985809|emb|CAA92294.2| C. elegans protein D1046.1a, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE03094 WBGene00008362 glycine-rich RNA-binding protein status:Partially_confirmed TR:Q18937 protein_id:CAA92294.2 [wormpep150.fasta]
  • 03094 WBGene00008362 glycine-rich RNA-binding protein status:Partially_confirmed TR:Q18937 protein_id:CAA92294.2 [wormpep130-phg-ecoli-orf-rand.fasta]
  • putative nuclear protein of eukaryotic origin (53.7 kD) (4J693) [Caenorhabditis elegans]gi|26985809|emb|CAA92294.2| Hypothetical protein D1046.1 [Caenorhabditis elegans] [nrdb_11152004_Chlamydomonas]
  • glycine-rich RNA-binding protein status:Partially_confirmed TR:Q18937 protein_id:CAA92294.2 [wormpep115.fasta.reversed]
  • CE03094 WBGene00008362 glycine-rich RNA-binding protein status:Partially_confirmed UniProt:Q18937_CAEEL protein_id:CAA92294.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03094 WBGene00008362 glycine-rich RNA-binding protein status:Partially_confirmed UniProt:Q18937_CAEEL protein_id:CAA92294.2| [wormORF-contam.fasta]
  • D1046.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein D1046.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE03094 WBGene00008362 locus:cfim-2 glycine-rich RNA-binding protein status:Partially_confirmed UniProt:Q18937 protein_id:CAA92294.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03094 WBGene00008362 locus:cfim-2 glycine-rich RNA-binding protein status:Confirmed UniProt:Q18937 protein_id:CAA92294.2 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE03094 WBGene00008362 locus:cfim-2 status:Confirmed UniProt:Q18937 protein_id:CAA92294.2 [wormpep246-ecoli-contam.fasta]
  • Isoform of C1P629, Cleavage Factor IM (CFIm) homolog OS=Caenorhabditis elegans GN=cfim-2 PE=1 SV=3 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 489 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    positive regulation of locomotion [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELDEAALL GDGNEQHDGP IDENALLDGK ELKEEDIDDL YDEAIAPTNS TESAKPVSPT  60
   61 ITTVTAPTAG IGAKPATSSE GRKYCCYVGN LLWYTTDADL LKALQSTGLA RSQFADMKFF 120
  121 ENRTNGQSKG YALLVLNSDA AVKQTMEILP TKTIHGQSPT VLSYNKTNQA KLEDAQAKNQ 180
  181 TRPDVKKKGF EEGCVNMGTI RIGAGGQTGR TGTSVSGRSG PPPLMMQQVR PTPLMSQPTS 240
  241 LPSNLNQAPQ MRLQINGQQV PLMNRAPVPQ QTMLGNGPLG GMNQQIQQQP QMMMGQQVRP 300
  301 MMQTSMGIQP MMGMNAPPPM NNQFQNRPPQ LGSMGVQPLM QMNTAMRPPI NGLPPVHVNP 360
  361 QMFPGLQGTV LSDAEFEDVM TRNQTVSSSA IARAITDASV GDIKGASETI LTAIQLIKNS 420
  421 RIGHDERCRQ LVYGLEHTLK GLESKGYSSR SKSHRDRSRS RERDRKRRRR SRTRSRSYSR 480
  481 SPSPRRRRY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..169] PSI-BLAST 33.154902 Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
    2 View Details [170..370] PSI-BLAST 7.221849 Sec24
    3 View Details [371..489] PSI-BLAST 14.69897 poly(A) binding protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.10590295737522 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.43479844212501 bayes_pls_golite062009
  • RNA binding
    		•  0.426544317458995 bayes_pls_golite062009
  • protein binding
    		•  0.303849616374798 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  1.22356908090969 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.30263065494542 bayes_pls_golite062009
  • protein binding
    		•  0.0377709835534661 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle