| Protein: | cfim-2 |
| Organism: | Caenorhabditis elegans |
| Length: | 489 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cfim-2.
| Description | E-value | Query Range |
Subject Range |
|
|
308.0 | [0..2] | [470..123] |
|
Region A: Residues: [1-169] |
1 11 21 31 41 51
| | | | | |
1 MAELDEAALL GDGNEQHDGP IDENALLDGK ELKEEDIDDL YDEAIAPTNS TESAKPVSPT 60
61 ITTVTAPTAG IGAKPATSSE GRKYCCYVGN LLWYTTDADL LKALQSTGLA RSQFADMKFF 120
121 ENRTNGQSKG YALLVLNSDA AVKQTMEILP TKTIHGQSPT VLSYNKTNQ
|
| Detection Method: |  |
| Confidence: | 33.154902 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.10590295737522 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43479844212501 | bayes_pls_golite062009 |
| RNA binding | 0.426544317458995 | bayes_pls_golite062009 |
| protein binding | 0.303849616374798 | bayes_pls_golite062009 |
|
Region A: Residues: [170-370] |
1 11 21 31 41 51
| | | | | |
1 AKLEDAQAKN QTRPDVKKKG FEEGCVNMGT IRIGAGGQTG RTGTSVSGRS GPPPLMMQQV 60
61 RPTPLMSQPT SLPSNLNQAP QMRLQINGQQ VPLMNRAPVP QQTMLGNGPL GGMNQQIQQQ 120
121 PQMMMGQQVR PMMQTSMGIQ PMMGMNAPPP MNNQFQNRPP QLGSMGVQPL MQMNTAMRPP 180
181 INGLPPVHVN PQMFPGLQGT V
|
| Detection Method: | |
| Confidence: | 7.221849 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [371-489] |
1 11 21 31 41 51
| | | | | |
1 LSDAEFEDVM TRNQTVSSSA IARAITDASV GDIKGASETI LTAIQLIKNS RIGHDERCRQ 60
61 LVYGLEHTLK GLESKGYSSR SKSHRDRSRS RERDRKRRRR SRTRSRSYSR SPSPRRRRY
|
| Detection Method: | |
| Confidence: | 14.69897 |
| Match: | 1g9lA |
| Description: | poly(A) binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.22356908090969 | bayes_pls_golite062009 |
| nucleic acid binding | 0.30263065494542 | bayes_pls_golite062009 |
| protein binding | 0.0377709835534661 | bayes_pls_golite062009 |
