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Protein Overview: prx-5

General Information:
Name(s) found: prx-5 / CE03054 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00004194 locus:prx-5 status:Confirmed UniProt:Q18426 protein_id:CAA91260.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 502 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein import into peroxisome matrix [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    response to stress [IEALink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    Molecular Function: peroxisome matrix targeting signal-1 binding [IDALink to PubMed articleLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGVVEGQCG QQNALVGLAN TFGTSNQRVA PSNAAASLLP SSSMGEQMAN EFLRQQARTM  60
   61 APTSFSMKSM QNNLPQASAS SSLAANWTKE FQPRQNQLAS QWSQQYTSSA PSMESAWRQV 120
  121 QAPSMTSTSS HQPITDAGMW SSEYLDTVDT SLTKSSGTQN WADDFMEQQD NYGMENTWKD 180
  181 AQAFEQRWEE IKRDMEKDES LQSPENYVYQ EANPFTTMSD PLMEGDNLMR NGDIGNAMLA 240
  241 YEAAVQKDPQ DARAWCKLGL AHAENEKDQL AMQAFQKCLQ IDAGNKEALL GLSVSQANEG 300
  301 MENEALHQLD KWMSSYLGSN STQVTTTPPL YSSFLDSDTF NRVEARFLDA ARQQGATPDP 360
  361 DLQNALGVLY NLNRNFARAV DSLKLAISKN PTDARLWNRL GATLANGDHT AEAISAYREA 420
  421 LKLYPTYVRA RYNLGISCMQ LSSYDEALKH FLSALELQKG GNDASGIWTT MRSAAIRTSN 480
  481 VPDNLLRAVE RRDLAAVKAS LV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..154] PSI-BLAST 12.0 Crystal structure of E.coli TPR-protein NlpI
    2 View Details [155..502] PSI-BLAST 31.30103 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • peroxisome targeting sequence binding
    		•  6.28836842401449 bayes_pls_golite062009
  • peroxisome matrix targeting signal-1 binding
    		•  5.30441166392789 bayes_pls_golite062009
  • binding
    		•  2.09193012129784 bayes_pls_golite062009
  • protein binding
    		•  1.52807685989528 bayes_pls_golite062009
  • signal sequence binding
    		•  1.13935627118933 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle