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Protein Overview: oma-1

General Information:
Name(s) found: oma-1 / CE03005 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00003864 locus:oma-1 status:Partially_confirmed UniProt:G5EC86 protein_id:CAA90977.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 407 amino acids

    Gene Ontology:
    Cellular Component: centrosome [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    P granule [IDALink to PubMed article]
    Biological Process: oocyte maturation [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    zinc ion binding [IEALink to PubMed article]
    catalytic activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVNGENNEK IDEHHLESSL AGVPTLPVSP LDHAKDLSQT NPNAQIGDLV TQTANLIAIK  60
   61 KQLLEDIAFN QHIQSMQVRA IQSFPQNNQV APPFQQFDPR RRGLARMQKP ESYKTVICQA 120
  121 WLESKTCSFA DNCRFAHGEE ELRPTFVEPL QNNKYKTKLC DKYTTTGLCP YGKRCLFIHP 180
  181 DHGPNAYIRA DKLLEVSQRH ALADIRDQME QHIMTNGRIA APPLSAIQHP LEMFARPSTP 240
  241 DEPAAKLPLG PTPVSTRGPR YELPTKELHD AEGAMTYPPS RWPLDPSMFA LDAWNMAHRP 300
  301 ASPLDSMVLG SAPNAGSFGM LGKQNTPGGV SGYSSAGSTP SQDLSSSSLN AASAAAAAAY 360
  361 FANSAVAQSL LMKSVATDPM MSCNGPFSPM PGFDQLAENM TKHLNLW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] deduced N/A No confident structure predictions are available.
    2 View Details [97..183] PSI-BLAST 23.0 Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
    3 View Details [184..407] MSA 12.191996 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.65

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle