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Protein Overview: ifb-1

General Information:
Name(s) found: ifb-1 / CE02619 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00002053 locus:ifb-1 Intermediate filament protein ifb-1 status:Confirmed UniProt:Q19289 protein_id:CCD65030.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 589 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: molting cycle, protein-based cuticle [IMPLink to PubMed article]
    collagen and cuticulin-based cuticle attachment to epithelium [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed articleLink to PubMed article]
    locomotion [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: structural molecule activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSHKESSEY EMQYRSTIQP RTAVRSQSRQ SGNYVSGGNG AGSGGRVLKM VTEMGSATVG  60
   61 GISPALSANA AKSFLEATDK EKKTLQGLND RLGNYIDRVK KLEEQNRKLV ADLDELRGKW 120
  121 GKDTSEIKIK YSESLSTARK DIDDAARRKA EVDVKVARHR DDLAEYRSRY EDIQQRRESD 180
  181 REKISQWTNA IADAQSEVEM LRARFKQLTD EEKRVTADNS RIWEELQKAR SDLDDETIGR 240
  241 IDFQNQVQTL MEELEFLRRV HEQEVKELQA LLAQAPADTR EFFKNELALA IRDIKDEYDI 300
  301 IAKQGKQDME SWYKLKVSEV QGSANRANME STYQRDEVKR MRDNIGDLRG KLGDLENKNS 360
  361 LLEKEVQNLN YQLTDDQRQY EAALNDRDAT LRRMREECQT LVAELQALLD TKQMLDAEIA 420
  421 IYRKMLEGEE TRVGLTQMVE QAVKTHSLQQ QENTDSTRSV RGEVSTKTTF QRSAKGNVTI 480
  481 SECDPNGKFI KLENSHRNKD ENVGEHKIRR KLDGRREIVY SIPANVVIKP GKNLTIYARD 540
  541 QGGINNPPES LVFDGENTWG IGANVVTSLV NKDGEERATH TQKTIQSGQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] MSA 1.691995 View MSA. No confident structure predictions are available.
    2 View Details [133..495] PSI-BLAST 19.0 Heavy meromyosin subfragment
    3 View Details [496..589] PSI-BLAST 26.0 Lamin A/C globular tail domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle