YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: ifb-1

General Information:
Name(s) found: ifb-1 / CE02618 [WormBase]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • WBGene00002053 locus:ifb-1 Intermediate filament protein ifb-1 status:Confirmed UniProt:Q19289 protein_id:CCD65029.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 558 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: molting cycle, protein-based cuticle [IMPLink to PubMed article]
    collagen and cuticulin-based cuticle attachment to epithelium [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed articleLink to PubMed article]
    locomotion [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    determination of adult lifespan [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: structural molecule activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAESAPQAP MSGGRVLKMV TEMGSATVGG ISPALSANAA KSFLEATDKE KKTLQGLNDR  60
   61 LGNYIDRVKK LEEQNRKLVA DLDELRGKWG KDTSEIKIKY SESLSTARKD IDDAARRKAE 120
  121 VDVKVARHRD DLAEYRSRYE DIQQRRESDR EKISQWTNAI ADAQSEVEML RARFKQLTDE 180
  181 EKRVTADNSR IWEELQKARS DLDDETIGRI DFQNQVQTLM EELEFLRRVH EQEVKELQAL 240
  241 LAQAPADTRE FFKNELALAI RDIKDEYDII AKQGKQDMES WYKLKVSEVQ GSANRANMES 300
  301 TYQRDEVKRM RDNIGDLRGK LGDLENKNSL LEKEVQNLNY QLTDDQRQYE AALNDRDATL 360
  361 RRMREECQTL VAELQALLDT KQMLDAEIAI YRKMLEGEET RVGLTQMVEQ AVKTHSLQQQ 420
  421 ENTDSTRSVR GEVSTKTTFQ RSAKGNVTIS ECDPNGKFIK LENSHRNKDE NVGEHKIRRK 480
  481 LDGRREIVYS IPANVVIKPG KNLTIYARDQ GGINNPPESL VFDGENTWGI GANVVTSLVN 540
  541 KDGEERATHT QKTIQSGQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] MSA 2.615996 View MSA. No confident structure predictions are available.
    2 View Details [97..423] PSI-BLAST 17.522879 Heavy meromyosin subfragment
    3 View Details [424..499] FFAS03 3.67 Solution structure of immunoglobulin like domain of mouse nuclear lamin
    4 View Details [500..558] PSI-BLAST 25.0 Lamin A/C globular tail domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle