YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: rpb-6

General Information:
Name(s) found: rpb-6 / CE02117 [WormBase]
Description(s) found:
Found 21 descriptions.
SHOW ALL
  • WBGene00007355 locus:rpb-6 Probable DNA-directed RNA polymerases I, II, and III subunit RPABC2 status:Confirmed UniProt:Q17684 protein_id:CAA90053.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 137 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: transcription, DNA-dependent [IEALink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    DNA-directed RNA polymerase activity [IEALink to PubMed article]
    calcium ion binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEDDYQDM DNDDFVDDNE MEDVIEEDPQ RPDNEDEDDD NVDENFELFD QGKAVPTSEH  60
   61 VTTPFMTKYE RARVLGTRAL QIAMGAPVMV ELEGETDPLE IARKELKQRR IPIIVRRYLP 120
  121 DGSYEDWPTD QLQLADW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..137] PSI-BLAST 36.0 RPB6

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  0.372436499192166 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle