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Protein Overview: rpy-1

General Information:
Name(s) found: rpy-1 / CE01807 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00004507 locus:rpy-1 43 kDa receptor-associated protein of the synapse homolog status:Confirmed UniProt:Q09485 protein_id:CCD65265.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 596 amino acids

    Gene Ontology:
    Cellular Component: synapse [IEALink to PubMed article]
    Biological Process: lipid storage [IMP]
    Molecular Function: zinc ion binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQRQAKQHM QAGVKLYHQR HYAQAINKWR QSLNRLNNAE DRFITLGYLA QALCDQGEYE  60
   61 GMLSYALSQM QLATDQNDSA MKCEAFLNLA KAYERLADFT KALQYGKASL EHPSMDPRTP 120
  121 GYAHLTIALA HLGMSQFQQC LESFESAMNV ANETSDRLLE LQICVGLGSL FTLLRDITKA 180
  181 LIFLRNALAI VQSVTVDDVH AKYRCLILYH LSVALRMKGS LVDAKEACDE ASQLAVEMGN 240
  241 RAIHARCMCS LADIYRELGE SEAKETITKS WARYEDAYRV MRGANDKMGE VLVLSSMAKS 300
  301 ASESRSHYTG QCECQAIQLN KKCIEIANQI GCKHVVLKCH LRLAELYSQL NDDDSEETAR 360
  361 RAASRLTQEM QLFCNFCGQR YGLKDESLQA LRCSHIFHEK CLHTYLLQRT DQTCPKCRCR 420
  421 AVLSDNISIR SSIASTIDVQ SPSTSFAPPG GVATPLVSAA AELGDITPQA TLTRRSQQDK 480
  481 ILRGAEKDID RVDRSLARLK SQQSAAANAC SAVAVPSPEV PSTTASCASE PILTASTTSQ 540
  541 SHTHSNANHK PPPPPRKPCC SQAALPPSSI VALPPAMPLA EDGPLVITHT PTVTDV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..390] PSI-BLAST 42.0 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    2 View Details [391..517] PSI-BLAST 3.09691 Crystal Structure of the Hypothetical protein VPA1032 from Vibrio parahaemolyticus, Northeast Structural Genomics Target VpR44
    3 View Details [518..596] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.06634498978728 bayes_pls_golite062009
  • protein binding
    		•  1.60857679122674 bayes_pls_golite062009
  • signal transducer activity
    		•  0.945586902460441 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.945586902460441 bayes_pls_golite062009
  • receptor activity
    		•  0.273696548489824 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle