| Protein: | rpy-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 596 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpy-1.
| Description | E-value | Query Range |
Subject Range |
|
|
274.0 | [0..2] | [549..202] |
|
Region A: Residues: [1-390] |
1 11 21 31 41 51
| | | | | |
1 MGQRQAKQHM QAGVKLYHQR HYAQAINKWR QSLNRLNNAE DRFITLGYLA QALCDQGEYE 60
61 GMLSYALSQM QLATDQNDSA MKCEAFLNLA KAYERLADFT KALQYGKASL EHPSMDPRTP 120
121 GYAHLTIALA HLGMSQFQQC LESFESAMNV ANETSDRLLE LQICVGLGSL FTLLRDITKA 180
181 LIFLRNALAI VQSVTVDDVH AKYRCLILYH LSVALRMKGS LVDAKEACDE ASQLAVEMGN 240
241 RAIHARCMCS LADIYRELGE SEAKETITKS WARYEDAYRV MRGANDKMGE VLVLSSMAKS 300
301 ASESRSHYTG QCECQAIQLN KKCIEIANQI GCKHVVLKCH LRLAELYSQL NDDDSEETAR 360
361 RAASRLTQEM QLFCNFCGQR YGLKDESLQA
|
| Detection Method: |  |
| Confidence: | 42.0 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.06634498978728 | bayes_pls_golite062009 |
| protein binding | 1.60857679122674 | bayes_pls_golite062009 |
| signal transducer activity | 0.945586902460441 | bayes_pls_golite062009 |
| molecular transducer activity | 0.945586902460441 | bayes_pls_golite062009 |
| receptor activity | 0.273696548489824 | bayes_pls_golite062009 |
|
Region A: Residues: [391-517] |
1 11 21 31 41 51
| | | | | |
1 LRCSHIFHEK CLHTYLLQRT DQTCPKCRCR AVLSDNISIR SSIASTIDVQ SPSTSFAPPG 60
61 GVATPLVSAA AELGDITPQA TLTRRSQQDK ILRGAEKDID RVDRSLARLK SQQSAAANAC 120
121 SAVAVPS
|
| Detection Method: | |
| Confidence: | 3.09691 |
| Match: | 1zbpA |
| Description: | Crystal Structure of the Hypothetical protein VPA1032 from Vibrio parahaemolyticus, Northeast Structural Genomics Target VpR44 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [518-596] |
1 11 21 31 41 51
| | | | | |
1 PEVPSTTASC ASEPILTAST TSQSHTHSNA NHKPPPPPRK PCCSQAALPP SSIVALPPAM 60
61 PLAEDGPLVI THTPTVTDV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
