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Protein Overview: clk-1

General Information:
Name(s) found: clk-1 / CE01438 [WormBase]
Description(s) found:
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  • WBGene00000536 locus:clk-1 Ubiquinone biosynthesis protein COQ7 homolog status:Confirmed UniProt:P48376 protein_id:CCD66658.1 [WormBase]
  • gi|9803028|gb|AAG00035.1| Clock (biological timing) abnormality protein 1 [Caenorhabditis elegans] [NCBI NR]
  • pir||T27545 hypothetical protein clk-1 - Caenorhabditis elegans [NCBI NR]
  • gi|17552756|ref|NP_498128.1| CLocK (biological timing) abnormality family member (clk-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|1353115|sp|P48376.1|COQ7_CAEEL RecName: Full=Ubiquinone biosynthesis protein COQ7 homolog; AltName: Full=Clock abnormal protein 1; Short=Protein clk-1 [NCBI NR]
  • 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Caenorhabditis elegans GN=clk-1 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE01438 WBGene00000536 locus:clk-1 status:Confirmed SW:P48376 protein_id:AAG00035.1 [wormpep150.fasta]
  • 01438 WBGene00000536 locus:clk-1 status:Confirmed SW:P48376 protein_id:AAG00035.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • CLocK (biological timing) abnormality CLK-1, ubiquinone biosynthesis protein (20.5 kD) (clk-1) [Caenorhabditis elegans]gi|9803028|gb|AAG00035.1| Clock (biological timing) abnormality protein 1 [Caenorhabditis elegans]gi|7498053|pir||T27545 hypothetical [nrdb_11152004_Chlamydomonas]
  • locus:clk-1 status:Partially_confirmed SW:P48376 protein_id:AAG00035.1 [wormpep115.fasta.reversed]
  • CE01438 locus:clk-1 status:Partially_confirmed [wormpep80.hongbin]
  • CE01438 WBGene00000536 locus:clk-1 status:Confirmed UniProt:P48376 protein_id:AAG00035.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01438 WBGene00000536 locus:clk-1 status:Confirmed UniProt:P48376 protein_id:AAG00035.1| [wormORF-contam.fasta]
  • Clock (biological timing) abnormality protein 1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CLocK (biological timing) abnormality family member (clk-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Ubiquinone biosynthesis protein COQ7 homolog (Clock abnormal protein 1) (Protein clk-1) [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01438 WBGene00000536 locus:clk-1 status:Confirmed UniProt:P48376 protein_id:CCD66658.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE01438 WBGene00000536 locus:clk-1 status:Confirmed UniProt:P48376 protein_id:CCD66658.1 Ubiquinone biosynthesis protein COQ7 homolog [wormpep246-ecoli-contam.fasta]
  • CE01438 WBGene00000536 locus:clk-1 status:Confirmed UniProt:P48376 protein_id:CCD66658.1 5-demethoxyubiquinone hydroxylase, mitochondrial [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 187 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDALink to PubMed article]
    Biological Process: protein metabolic process [IEALink to PubMed article]
    oxidative phosphorylation [IMPLink to PubMed article]
    determination of adult lifespan [IGILink to PubMed article][IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    response to drug [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    positive regulation of behavior [IMPLink to PubMed article]
    cellular respiration [TASLink to PubMed article]
    positive regulation of developmental process [IMPLink to PubMed article]
    ubiquinone biosynthetic process [IDALink to PubMed article][IEALink to PubMed article][IMPLink to PubMed articleLink to PubMed article]
    adult behavior [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: molecular_function [NDLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRVITRGAH TAASRQALIE KIIRVDHAGE LGADRIYAGQ LAVLQGSSVG SVIKKMWDEE  60
   61 KEHLDTMERL AAKHNVPHTV FSPVFSVAAY ALGVGSALLG KEGAMACTIA VEELIGQHYN 120
  121 DQLKELLADD PETHKELLKI LTRLRDEELH HHDTGVEHDG MKAPAYSALK WIIQTGCKGA 180
  181 IAIAEKI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..187] FFAS03 3.5 Hypothetical Protein Pfu-1136390-001 From Pyrococcus furiosus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity
    		•  2.54239919926847 bayes_pls_golite062009
  • binding
    		•  2.15097517783454 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.289249271377329 bayes_pls_golite062009
  • protein binding
    		•  0.222916509072005 bayes_pls_golite062009
  • catalytic activity
    		•  0.219299244701657 bayes_pls_golite062009
  • DNA binding
    		•  0.160477208079303 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle