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Protein Overview: cdka-1

General Information:
Name(s) found: cdka-1 / CE01096 [WormBase]
Description(s) found:
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  • WBGene00011955 locus:cdka-1 status:Partially_confirmed UniProt:Q0G843 protein_id:CAL36520.1 [WormBase]
  • pir||T25178 hypothetical protein T23F11.3 - Caenorhabditis elegans [NCBI NR]
  • ref|NP_497951.1| cyclin-dependent kinase 5 activator, possibly N-myristoylated (41.0 kD) (3F753) [Caenorhabditis elegans] [NCBI NR]
  • gi|133901752|ref|NP_001076650.1| Cyclin-Dependent Kinase 5 Activating protein homolog family member (cdka-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|112982602|emb|CAL36520.1| C. elegans protein T23F11.3b, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • cyclin-dependent kinase 5 activator, possibly N-myristoylated (41.0 kD) (3F753) [Caenorhabditis elegans]gi|7508308|pir||T25178 hypothetical protein T23F11.3 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE01096 status:Predicted SW:Q22695 protein_id:CAA86458.1 [wormpep80.hongbin]
  • CE01096 WBGene00011955 locus:cdka-1 status:Partially_confirmed UniProt:Q0G843_CAEEL protein_id:CAL36520.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01096 WBGene00011955 locus:cdka-1 status:Partially_confirmed UniProt:Q0G843_CAEEL protein_id:CAL36520.1| [wormORF-contam.fasta]
  • Hypothetical protein T23F11.3b [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE01096 WBGene00011955 locus:cdka-1 status:Partially_confirmed TR:Q0G843 protein_id:CAL36520.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE01096 WBGene00011955 locus:cdka-1 status:Partially_confirmed UniProt:Q0G843 protein_id:CAL36520.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01096 WBGene00011955 locus:cdka-1 status:Partially_confirmed UniProt:Q22695 protein_id:CAL36520.1 Cyclin-dependent kinase 5 activator 1 [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
  • Isoform of Q22695, Isoform b of Cyclin-dependent kinase 5 activator 1 OS=Caenorhabditis elegans GN=cdka-1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 366 amino acids

    Gene Ontology:
    Cellular Component: cyclin-dependent protein kinase 5 holoenzyme complex [IEALink to PubMed article]
    Biological Process: synaptic vesicle transport [IMPLink to PubMed article]
    synaptic transmission, GABAergic [IGILink to PubMed article][IMPLink to PubMed article]
    Molecular Function: cyclin-dependent protein kinase 5 activator activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGANLTSPLP HHHRTQTTSV CNHLFSPGDG GPTFAPQRDS NTSSRSSSNA KESVLMQGWN  60
   61 WSKRNIQPVM SRRSLPKSGS SSEATSSKSS DSLVSFTRNV STSTSSQYGK ISISLDRNQN 120
  121 YKSVPRPSDT TTIIPNYYSL REEFRRGLQI NTRQDLVNNN LASNDLSVIG SPKHVPRPRS 180
  181 VLRDDNANCD ISPIAEQENV PSEKRGTKKT IIQASTSELL RGLGIFISNN CDVSDFDPAH 240
  241 LVTWLRSVDR SLLLQGWQDI AFINPANLVF IFLLVRDVLP DERHLIHTLE ELHAWILSCL 300
  301 YVSYSYMGNE ISYPLKPFLI GNDRNTFWNR CVAMVTSHSR QMLLLNSSST FFSEVFTDLK 360
  361 HCSSSE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..190] Pfam 40.823909 No description for PF03261.6 was found. No confident structure predictions are available.
    2 View Details [191..366] PSI-BLAST 86.69897 Structural mechanism for the inhibition of CDK5-p25 by roscovitine, aloisine and indirubin.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  0.856796143703865 bayes_pls_golite062009
  • protein binding
    		•  0.73326264902081 bayes_pls_golite062009
  • kinase regulator activity
    		•  0.29156514721728 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.27414343875363 bayes_pls_golite062009
  • protein kinase regulator activity
    		•  0.19903417452788 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle