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Protein Overview: CE01089

General Information:
Name(s) found: CE01089 [WormBase]
Description(s) found:
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  • WBGene00011636 locus:cec-3 Chromo domain-containing protein T09A5.8 status:Confirmed UniProt:P45968 protein_id:CAA85339.1 [WormBase]
  • pir||T24725 hypothetical protein T09A5.8 - Caenorhabditis elegans [NCBI NR]
  • gi|3879649|emb|CAA85339.1| C. elegans protein T09A5.8, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17536159|ref|NP_495652.1| hypothetical protein T09A5.8 [Caenorhabditis elegans] [NCBI NR]
  • gi|1176603|sp|P45968.1|YNZ8_CAEEL RecName: Full=Chromo domain-containing protein T09A5.8 [NCBI NR]
  • Chromo domain-containing protein T09A5.8 OS=Caenorhabditis elegans GN=T09A5.8 PE=4 SV=1 [Swiss-Prot]
  • Chromo domain-containing protein cec-3 OS=Caenorhabditis elegans GN=cec-3 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE01089 WBGene00011636 chromosomal organisation modifier protein status:Confirmed SW:P45968 protein_id:CAA85339.1 [wormpep150.fasta]
  • 01089 WBGene00011636 chromosomal organisation modifier protein status:Confirmed SW:P45968 protein_id:CAA85339.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • clr4p like (37.7 kD) (2I148) [Caenorhabditis elegans]gi|3879649|emb|CAA85339.1| Hypothetical protein T09A5.8 [Caenorhabditis elegans]gi|7507510|pir||T24725 hypothetical protein T09A5.8 - Caenorhabditis elegansgi|1176603|sp|P45968|YNZ8_CAEEL Hypothetica [nrdb_11152004_Chlamydomonas]
  • chromosomal organisation modifier protein status:Confirmed SW:P45968 protein_id:CAA85339.1 [wormpep115.fasta.reversed]
  • CE01089 chromosomal organisation modifier protein status:Partially_confirmed SW:P45968 protein_id:CAA85339.1 [wormpep80.hongbin]
  • CE01089 WBGene00011636 chromosomal organisation modifier protein status:Confirmed UniProt:YNZ8_CAEEL protein_id:CAA85339.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01089 WBGene00011636 chromosomal organisation modifier protein status:Confirmed UniProt:YNZ8_CAEEL protein_id:CAA85339.1| [wormORF-contam.fasta]
  • T09A5.8 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T09A5.8 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Chromo domain-containing protein T09A5.8 [nr-271106-contam.fasta]
  • CE01089 WBGene00011636 chromosomal organisation modifier protein status:Confirmed UniProt:P45968 protein_id:CAA85339.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01089 WBGene00011636 locus:cec-3 chromosomal organisation modifier protein status:Confirmed UniProt:P45968 protein_id:CAA85339.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE01089 WBGene00011636 locus:cec-3 status:Confirmed UniProt:P45968 protein_id:CAA85339.1 Chromo domain-containing protein T09A5.8 [wormpep246-ecoli-contam.fasta]
  • CE01089 WBGene00011636 locus:cec-3 status:Confirmed UniProt:P45968 protein_id:CAA85339.1 Chromo domain-containing protein cec-3 [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 339 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    chromatin [IEALink to PubMed article]
    Biological Process: embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    chromatin assembly or disassembly [IEALink to PubMed article]
    Molecular Function: chromatin binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNEGSREES REPEAREGKS DEIFEVEKIL AHKVTDNLLV LQVRWLGYGA DEDTWEPEED  60
   61 LQECASEVVA EYYKKLKVTD KTELIELLQK QIKKNKSQKS KKRSKTVSDH ESNHDSDGSY 120
  121 GTPKTSKKSK KSAKNETPVS SKVPKVPTKA ALKSYEATVS GPVAPNNAKK AAMEVRDTRR 180
  181 NWLDEESSDD EAETTAPLSD VEKIASKVKV VKAVEEKAEE PVKRPSTPPK PREVVIKKDP 240
  241 SESPVASASS VIPTSKRKSI NAETSNGRQR TLAPPVIVKD ETTWTVDGIA RHTDVDNTKT 300
  301 KLILMTNSAT GERKVVEGRE AFELDGWALA KYLLDRCEF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] PSI-BLAST 7.522879 Polycomb chromodomain complexed with the histone H3 tail containing trimethyllysine 27.
    2 View Details [91..156] deduced N/A No confident structure predictions are available.
    3 View Details [157..339] MSA 2.157997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.29119158874597 bayes_pls_golite062009
  • protein binding
    		•  0.92128574628879 bayes_pls_golite062009
  • chromatin binding
    		•  0.147288588666239 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle