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Protein Overview: snfc-5

General Information:
Name(s) found: snfc-5 / CE01045 [WormBase]
Description(s) found:
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  • WBGene00011111 locus:snfc-5 status:Confirmed UniProt:Q21831 protein_id:CAA83625.1 [WormBase]
  • gi|3878949|emb|CAA83625.1| C. elegans protein R07E5.3, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • pir||E88427 protein R07E5.3 [imported] - Caenorhabditis elegans [NCBI NR]
  • gi|17554496|ref|NP_497890.1| hypothetical protein R07E5.3 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE01045 WBGene00011111 Snf5 (yeast) status:Confirmed TR:Q21831 protein_id:CAA83625.1 [wormpep150.fasta]
  • 01045 WBGene00011111 Snf5 (yeast) status:Confirmed TR:Q21831 protein_id:CAA83625.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • swi Snf related matrix associated actin dependent regulator of chromatin subfamily b member 1 (42.8 kD) (3F495) [Caenorhabditis elegans]gi|3878949|emb|CAA83625.1| Hypothetical protein R07E5.3 [Caenorhabditis elegans]gi|25395690|pir||E88427 protein R07E5 [nrdb_11152004_Chlamydomonas]
  • Snf5 (yeast) status:Partially_confirmed TR:Q21831 protein_id:CAA83625.1 [wormpep115.fasta.reversed]
  • CE01045 Snf5 (yeast) status:Partially_confirmed TR:Q21831 protein_id:CAA83625.1 [wormpep80.hongbin]
  • CE01045 WBGene00011111 Snf5 (yeast) status:Confirmed UniProt:Q21831_CAEEL protein_id:CAA83625.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01045 WBGene00011111 Snf5 (yeast) status:Confirmed UniProt:Q21831_CAEEL protein_id:CAA83625.1| [wormORF-contam.fasta]
  • Hypothetical protein R07E5.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • R07E5.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE01045 WBGene00011111 locus:snfc-5 Snf5 (yeast) status:Confirmed UniProt:Q21831 protein_id:CAA83625.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01045 WBGene00011111 locus:snfc-5 status:Confirmed UniProt:Q21831 protein_id:CAA83625.1 [wormpep246-ecoli-contam.fasta]
  • SNF chromatin remodeling Complex component OS=Caenorhabditis elegans GN=snfc-5 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 381 amino acids

    Gene Ontology:
    Cellular Component: nuclear chromosome [IEALink to PubMed article]
    Biological Process: chromatin remodeling [IEALink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    oviposition [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of locomotion [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTKTLSQ TYGPRPQSFS LDEAGERYYI GSEIGAYLRL HRGTLYKKYP LLWRKVATSD  60
   61 DKDKLKQIAM SNAFLHTNIM LLRAHEVDEL LDGSEEKYRA AGAAPSTPRT EGASRTVAKT 120
  121 PATGWAGQQV TSGSHHLESV PCSCPIAHSR GRMKHRELVY SAEDLEMSKR VMKNAEEGED 180
  181 LVPIRLDMEL DGIKLRDTFT FNKNEKMITP EMIAEIMCED LDLPLAVFQP AITAAINQQL 240
  241 EASTEAPPLD VNICDQRAVL KLNINVGNQS LVDQFEWDMS DPNNSPEEFS RNICKELGLG 300
  301 GEFMSGIAYS IRGQLQWNQR TYAFSESPLA TVDCPFRTSS EVESWGPFLE TLTDAEIEKK 360
  361 MRDQDRNTRR MRRLVGGGFN Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] MSA 2.007991 View MSA. No confident structure predictions are available.
    2 View Details [145..314] MSA 4.039989 View MSA. No confident structure predictions are available.
    3 View Details [315..381] MSA 3.037995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle