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View Structure Prediction Details

Protein: snfc-5
Organism: Caenorhabditis elegans
Length: 381 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snfc-5.

Description E-value Query
Range
Subject
Range
SNF5_XENLA - SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xen...
611.0 [0..6] [377..3]

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Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTKTLSQ TYGPRPQSFS LDEAGERYYI GSEIGAYLRL HRGTLYKKYP LLWRKVATSD  60
   61 DKDKLKQIAM SNAFLHTNIM LLRAHEVDEL LDGSEEKYRA AGAAPSTPRT EGASRTVAKT 120
  121 PATGWAGQQV TSGSHHLESV PCSC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [145-314]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIAHSRGRMK HRELVYSAED LEMSKRVMKN AEEGEDLVPI RLDMELDGIK LRDTFTFNKN  60
   61 EKMITPEMIA EIMCEDLDLP LAVFQPAITA AINQQLEAST EAPPLDVNIC DQRAVLKLNI 120
  121 NVGNQSLVDQ FEWDMSDPNN SPEEFSRNIC KELGLGGEFM SGIAYSIRGQ 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [315-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQWNQRTYAF SESPLATVDC PFRTSSEVES WGPFLETLTD AEIEKKMRDQ DRNTRRMRRL  60
   61 VGGGFNY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle