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Protein Overview: snfc-5

General Information:
Name(s) found: snfc-5 / CE01045 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00011111 locus:snfc-5 status:Confirmed UniProt:Q21831 protein_id:CAA83625.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 381 amino acids

    Gene Ontology:
    Cellular Component: nuclear chromosome [IEALink to PubMed article]
    Biological Process: chromatin remodeling [IEALink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    oviposition [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of locomotion [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTKTLSQ TYGPRPQSFS LDEAGERYYI GSEIGAYLRL HRGTLYKKYP LLWRKVATSD  60
   61 DKDKLKQIAM SNAFLHTNIM LLRAHEVDEL LDGSEEKYRA AGAAPSTPRT EGASRTVAKT 120
  121 PATGWAGQQV TSGSHHLESV PCSCPIAHSR GRMKHRELVY SAEDLEMSKR VMKNAEEGED 180
  181 LVPIRLDMEL DGIKLRDTFT FNKNEKMITP EMIAEIMCED LDLPLAVFQP AITAAINQQL 240
  241 EASTEAPPLD VNICDQRAVL KLNINVGNQS LVDQFEWDMS DPNNSPEEFS RNICKELGLG 300
  301 GEFMSGIAYS IRGQLQWNQR TYAFSESPLA TVDCPFRTSS EVESWGPFLE TLTDAEIEKK 360
  361 MRDQDRNTRR MRRLVGGGFN Y

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-1 hcp1 IP from december2004 Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..144] MSA 2.007991 View MSA. No confident structure predictions are available.
    2 View Details [145..314] MSA 4.039989 View MSA. No confident structure predictions are available.
    3 View Details [315..381] MSA 3.037995 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle