YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: rnp-4

General Information:
Name(s) found: rnp-4 / CE01044 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00004387 locus:rnp-4 status:Confirmed UniProt:Q21832 protein_id:CAA83626.1 [WormBase]
  • gi|3878950|emb|CAA83626.1| C. elegans protein R07E5.14, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • pir||F88427 protein R07E5.14 [imported] - Caenorhabditis elegans [NCBI NR]
  • gi|17554514|ref|NP_497891.1| RNP (RRM RNA binding domain) containing family member (rnp-4) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE01044 WBGene00004387 locus:rnp-4 RNA binding domain status:Confirmed TR:Q21832 protein_id:CAA83626.1 [wormpep150.fasta]
  • 01044 WBGene00004387 locus:rnp-4 RNA binding domain status:Confirmed TR:Q21832 protein_id:CAA83626.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • RNA-binding protein like (rnp-5) [Caenorhabditis elegans]gi|3878950|emb|CAA83626.1| Hypothetical protein R07E5.14 [Caenorhabditis elegans]gi|25395691|pir||F88427 protein R07E5.14 [imported] - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:rnp-4 RNA binding domain status:Confirmed TR:Q21832 protein_id:CAA83626.1 [wormpep115.fasta.reversed]
  • CE01044 RNA binding domain status:Confirmed TR:Q21832 protein_id:CAA83626.1 [wormpep80.hongbin]
  • CE01044 WBGene00004387 locus:rnp-4 RNA binding domain status:Confirmed UniProt:Q21832_CAEEL protein_id:CAA83626.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01044 WBGene00004387 locus:rnp-4 RNA binding domain status:Confirmed UniProt:Q21832_CAEEL protein_id:CAA83626.1| [wormORF-contam.fasta]
  • RNP (RRM RNA binding domain) containing family member (rnp-4) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein R07E5.14 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE01044 WBGene00004387 locus:rnp-4 RNA binding domain status:Confirmed UniProt:Q21832 protein_id:CAA83626.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01044 WBGene00004387 locus:rnp-4 status:Confirmed UniProt:Q21832 protein_id:CAA83626.1 [wormpep246-ecoli-contam.fasta]
  • CE01044 WBGene00004387 locus:rnp-4 status:Confirmed UniProt:Q21832 protein_id:CAA83626.1 RNA-binding protein 8A [c_elegans-PRJNA13758-WS250-ecoli-contam.fasta]
  • RNA-binding protein 8A OS=Caenorhabditis elegans GN=rnp-4 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 142 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    cytoplasm [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    feminization of hermaphroditic germ-line [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNEVEMED VVANAERSRG RGLAQSRNRE RITYDVVDEE SSATSGAPQR SVEGWIVFVT  60
   61 NIHEEATEDD VHDKFSEYGK IKNIHLNLDR RTGFLKGYAL VEYETQKEAN EAIDQSNDTD 120
  121 LLGQNVKVDW CFVKGKKTSG KR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..142] PSI-BLAST 20.39794 CG8781 protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.10590295737522 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.43479844212501 bayes_pls_golite062009
  • RNA binding
    		•  0.426544317458995 bayes_pls_golite062009
  • protein binding
    		•  0.303849616374798 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle