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Protein Overview: rps-0

General Information:
Name(s) found: rps-0 / CE00854 [WormBase]
Description(s) found:
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  • WBGene00004469 locus:rps-0 40S ribosomal protein SA status:Confirmed UniProt:P46769 protein_id:CAA86061.1 [WormBase]
  • pir||T18742 hypothetical protein B0393.1 - Caenorhabditis elegans [NCBI NR]
  • gi|3873741|emb|CAA86061.1| C. elegans protein B0393.1, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17554768|ref|NP_497978.1| Ribosomal Protein, Small subunit family member (rps-0) [Caenorhabditis elegans] [NCBI NR]
  • gi|1173295|sp|P46769.3|RSSA_CAEEL RecName: Full=40S ribosomal protein SA [NCBI NR]
  • 40S ribosomal protein SA OS=Caenorhabditis elegans GN=rps-0 PE=1 SV=3 [Swiss-Prot]
  • (P46769) Probable 40S ribosomal protein SA (p40) [Swiss-Prot]
  • [wormpep67.fasta]
  • CE00854 WBGene00004469 locus:rps-0 40S ribosomal protein status:Confirmed SW:P46769 protein_id:CAA86061.1 [wormpep150.fasta]
  • 00854 WBGene00004469 locus:rps-0 40S ribosomal protein status:Confirmed SW:P46769 protein_id:CAA86061.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ribosomal Protein, Small subunit (30.7 kD) (rps-0) [Caenorhabditis elegans]gi|3873741|emb|CAA86061.1| Hypothetical protein B0393.1 [Caenorhabditis elegans]gi|7494910|pir||T18742 hypothetical protein B0393.1 - Caenorhabditis elegansgi|1173295|sp|P46769| [nrdb_11152004_Chlamydomonas]
  • locus:rps-0 40S ribosomal protein status:Confirmed SW:P46769 protein_id:CAA86061.1 [wormpep115.fasta.reversed]
  • CE00854 locus:rps-0 40S ribosomal protein status:Confirmed SW:P46769 protein_id:CAA86061.1 [wormpep80.hongbin]
  • CE00854 WBGene00004469 locus:rps-0 40S ribosomal protein status:Confirmed UniProt:RSSA_CAEEL protein_id:CAA86061.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE00854 WBGene00004469 locus:rps-0 40S ribosomal protein status:Confirmed UniProt:RSSA_CAEEL protein_id:CAA86061.1| [wormORF-contam.fasta]
  • Hypothetical protein B0393.1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Probable 40S ribosomal protein SA (p40) [nr-271106-contam.fasta]
  • Ribosomal Protein, Small subunit family member (rps-0) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE00854 WBGene00004469 locus:rps-0 40S ribosomal protein status:Confirmed UniProt:P46769 protein_id:CAA86061.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE00854 WBGene00004469 locus:rps-0 status:Confirmed UniProt:P46769 protein_id:CAA86061.1 40S ribosomal protein SA [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 276 amino acids

    Gene Ontology:
    Cellular Component: small ribosomal subunit [IEALink to PubMed article]
    ribosome [IEALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    translation [IEALink to PubMed article]
    Molecular Function: structural constituent of ribosome [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGAAHSAL TEEDVMKLLA TQAHLGSTNL NFQMQQYVYK RRFDGPNIIN VKKTWEKLLL  60
   61 AARAIAAVEN PADVVVVSAR PYAQRALLKF AAHTGATAIF GRFSPGCLTN QIQKTFKEPR 120
  121 LLVISDPRID HQAVTEASYV GVPVISFVNT ESPLKLIDIG VPCNNKGERS IGLMWWMLAR 180
  181 EILILRGKIS RQTGFVLEGK EIMPDLYFYR DPTETEKEET GAHADVAEAQ EYQQPTDIDF 240
  241 TTQGGKVDDW AAETATWTAE TKTTEEWANA PTQSNW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run knl-1 No Comments Cheeseman, I.M., et al. (2004)
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..203] PSI-BLAST 59.69897 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
    2 View Details [204..276] MSA 1.08699 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle