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Protein Overview: vps-33.1

General Information:
Name(s) found: vps-33.1 / CE00539 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00015130 locus:vps-33.1 Vacuolar protein sorting-associated protein 33A status:Partially_confirmed UniProt:P34260 protein_id:CCD61712.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 603 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: vesicle-mediated transport [IEALink to PubMed article]
    vesicle docking during exocytosis [IEALink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANEDRDDA AAILNWEGTS EIKSANEYSR NLLFSVLDSL DGNKTIVWDR DRSVMHRVNL  60
   61 FAGASVLAAH GVVANHSIET KKSASTPHVV FFLAPTMVSL DLLCDYIDNV RNDSKILYQV 120
  121 FFIPEAWFVV RESLKTRAEG KYWERLESVK EIPLCWLPRD GECLSLSSPQ IAARLLINGD 180
  181 WTHLHKCAVA LNQLIDMCRG RSSSSNQRPM SIYAKGKWAS DVAKMMGKIR NSAEADSMTK 240
  241 NLDPIEGLLK INRIVLIDRW MDPLTPMLSQ LTFYGLLDEI YGIGMVNSVK VPEMEFKNEK 300
  301 DGDPFQEKEV YLIDEVYHRL KHSHINAVSI EASKVLAEIR DDEQFDRDKM SVAEYSVLVK 360
  361 KMPKIINRKK MIEVHMRLAE MIQSHVYCKQ SDSIKLERDL LEYSDSDKAI PLIEDLIFDA 420
  421 SPLNAVLRLI SVHSLTCGGL KPSVLQHYRR IVNQSYGSSA LNKVLKMQKM GLIREKGGGG 480
  481 KMQCEYAQMM FQQMKKNHDM LPEEFSEAKL DDMAYAYSGF SPLLCKMLEE GDRVKWVGWP 540
  541 KTVIGDKSDL IAERDGRGTC VFVIGGLTRS ELAIIRENLP NVALITTSAL ITGDKLLNNI 600
  601 TNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..603] PSI-BLAST 130.0 Neuronal Sec1, NSec1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • SNARE binding
    		•  3.42828022195984 bayes_pls_golite062009
  • binding
    		•  2.7837022903231 bayes_pls_golite062009
  • syntaxin binding
    		•  2.11416428645287 bayes_pls_golite062009
  • protein binding
    		•  1.7224010512877 bayes_pls_golite062009
  • syntaxin-1 binding
    		•  0.269372794919901 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle