| Protein: | vps-33.1 |
| Organism: | Caenorhabditis elegans |
| Length: | 603 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps-33.1.
| Description | E-value | Query Range |
Subject Range |
|
|
472.0 | [0..23] | [603..4] |
|
Region A: Residues: [1-603] |
1 11 21 31 41 51
| | | | | |
1 MAANEDRDDA AAILNWEGTS EIKSANEYSR NLLFSVLDSL DGNKTIVWDR DRSVMHRVNL 60
61 FAGASVLAAH GVVANHSIET KKSASTPHVV FFLAPTMVSL DLLCDYIDNV RNDSKILYQV 120
121 FFIPEAWFVV RESLKTRAEG KYWERLESVK EIPLCWLPRD GECLSLSSPQ IAARLLINGD 180
181 WTHLHKCAVA LNQLIDMCRG RSSSSNQRPM SIYAKGKWAS DVAKMMGKIR NSAEADSMTK 240
241 NLDPIEGLLK INRIVLIDRW MDPLTPMLSQ LTFYGLLDEI YGIGMVNSVK VPEMEFKNEK 300
301 DGDPFQEKEV YLIDEVYHRL KHSHINAVSI EASKVLAEIR DDEQFDRDKM SVAEYSVLVK 360
361 KMPKIINRKK MIEVHMRLAE MIQSHVYCKQ SDSIKLERDL LEYSDSDKAI PLIEDLIFDA 420
421 SPLNAVLRLI SVHSLTCGGL KPSVLQHYRR IVNQSYGSSA LNKVLKMQKM GLIREKGGGG 480
481 KMQCEYAQMM FQQMKKNHDM LPEEFSEAKL DDMAYAYSGF SPLLCKMLEE GDRVKWVGWP 540
541 KTVIGDKSDL IAERDGRGTC VFVIGGLTRS ELAIIRENLP NVALITTSAL ITGDKLLNNI 600
601 TNI
|
| Detection Method: |  |
| Confidence: | 130.0 |
| Match: | 1dn1A |
| Description: | Neuronal Sec1, NSec1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| SNARE binding | 3.42828022195984 | bayes_pls_golite062009 |
| binding | 2.7837022903231 | bayes_pls_golite062009 |
| syntaxin binding | 2.11416428645287 | bayes_pls_golite062009 |
| protein binding | 1.7224010512877 | bayes_pls_golite062009 |
| syntaxin-1 binding | 0.269372794919901 | bayes_pls_golite062009 |
