YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: sqv-3

General Information:
Name(s) found: sqv-3 / CE00306 [WormBase]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • WBGene00005021 locus:sqv-3 Probable galactosyltransferase sqv-3 status:Confirmed UniProt:P34548 protein_id:CAA82350.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 289 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: carbohydrate metabolic process [IEALink to PubMed article]
    vulval development [IMPLink to PubMed article]
    regulation of cell morphogenesis [IMPLink to PubMed article]
    morphogenesis of an epithelium [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    oviposition [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: transferase activity, transferring glycosyl groups [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKTRLILS GTILISLAAC YFLVLLVLDL EITRDLMTDY VDPRPLQTSY HKLCVIVPYR  60
   61 DRLEELREFS PHMSKFLHNQ NVSHHILIIN QTDPLRFNRA SLINVGWNEA DRLGCDYMVM 120
  121 NDVDLLPVNP EVPYDFPGIG VIRHITSPQY HPKYHYEKFI GGILMLTLKD YKKLNGMSNK 180
  181 YWGWGLEDDE FYLRIIDSKL NLTRVSGLST DSSNTFRHIH GPKRKRDYTP KKNDKNQWEI 240
  241 KRKRDHVSGL HDVRYLIDSR QLLDFSGTSV TIINVALHCD LNWTPYCKS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..289] PSI-BLAST 116.0 beta 1,4 galactosyltransferase (b4GalT1)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring hexosyl groups
    		•  4.49413422196176 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  4.08451171179562 bayes_pls_golite062009
  • glucuronosyltransferase activity
    		•  3.57513377728523 bayes_pls_golite062009
  • acetylgalactosaminyltransferase activity
    		•  3.4614674054855 bayes_pls_golite062009
  • polypeptide N-acetylgalactosaminyltransferase activity
    		•  3.19923094610567 bayes_pls_golite062009
  • mannosyltransferase activity
    		•  2.61384249067286 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  2.60650378115696 bayes_pls_golite062009
  • heparan sulfate N-acetylglucosaminyltransferase activity
    		•  2.42139682088952 bayes_pls_golite062009
  • catalytic activity
    		•  1.88676710996045 bayes_pls_golite062009
  • glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity
    		•  1.6603302881547 bayes_pls_golite062009
  • transferase activity
    		•  1.47184463413038 bayes_pls_golite062009
  • N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity
    		•  1.11758321292207 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  1.03393419806381 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.992215002450258 bayes_pls_golite062009
  • alpha-1,2-mannosyltransferase activity
    		•  0.82476668382543 bayes_pls_golite062009
  • binding
    		•  0.667238976803188 bayes_pls_golite062009
  • UDP-N-acetylglucosamine diphosphorylase activity
    		•  0.513376694534047 bayes_pls_golite062009
  • uridylyltransferase activity
    		•  0.321928989676507 bayes_pls_golite062009
  • mannose-phosphate guanylyltransferase activity
    		•  0.2363835251362 bayes_pls_golite062009
  • cytidylyltransferase activity
    		•  0.218759888732981 bayes_pls_golite062009
  • glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity
    		•  0.119213830545019 bayes_pls_golite062009
  • UDP-galactosyltransferase activity
    		•  0.10185872015123 bayes_pls_golite062009
  • galactosyltransferase activity
    		•  0.0931461042017721 bayes_pls_golite062009
  • guanylyltransferase activity
    		•  0.0539392112504681 bayes_pls_golite062009
  • acetylglucosaminyltransferase activity
    		•  0.0278258721775009 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle