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Protein Overview: CE00268

General Information:
Name(s) found: CE00268 [WormBase]
Description(s) found:
Found 22 descriptions.
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  • WBGene00019678 Ribosome biogenesis protein BRX1 homolog status:Confirmed UniProt:P34524 protein_id:CCD71195.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 352 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    gamete generation [IMPLink to PubMed article]
    growth [IMPLink to PubMed articleLink to PubMed article]
    reproduction [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFSKIKKV QEEESAHQKM EWEAAGAKDS SSDDSSDESD NDDQPKQATE ETRKRAELWT  60
   61 NRERVLVLCS RGADVRTRYL MKDIKDLLPH AKGDSKLDQQ KSLNVLNEIA EMKNCTKVMY 120
  121 FESRKRKDTY LWMSNVEKGP SIKFLVHNVH TMKELKMSGN CLRASRPVLS FDDAFDKKPQ 180
  181 LKLIKAVLMQ TLGTPHHHPR SQPFVDHVFN FSVGEGDKIW FRNFQIVDES LQLQEVGPRF 240
  241 VLEMVRLFAG SFEGAVLYDN PNYVSPNVIR REHRKGQHSY IEKQLAVKAS NIKQAKVTEI 300
  301 LAEKTVDLVG KEFDTQNNAA ADSEAAAQIT AQIEKRRVRK KKSQASKYTG SD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..173] PSI-BLAST 11.0 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    2 View Details [174..262] FFAS03 1.46 Crystal structure of probable ribosomal biogenesis protein from Aeropyrum pernix K1
    3 View Details [263..352] MSA 4.182994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • aminoacyl-tRNA ligase activity
    		•  3.87211694771248 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  3.87184649959884 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  3.87184649959884 bayes_pls_golite062009
  • ligase activity
    		•  2.64230127203047 bayes_pls_golite062009
  • proline-tRNA ligase activity
    		•  2.35871952544841 bayes_pls_golite062009
  • binding
    		•  1.73857064375258 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.358563180490135 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle