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Protein Overview: SPAC1486.09

General Information:
Name(s) found: SPAC1486.09 [Sanger Pombe]
Description(s) found:
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  • gi|74625961|sp|Q9UTK0.1|NOB1_SCHPO RecName: Full=20S-pre-rRNA D-site endonuclease nob1; AltName: Full=Pre-rRNA-processing endonuclease nob1 [NCBI NR]
  • gi|6523779|emb|CAB62419.1| ribosome biogenesis protein Nob1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115009|ref|NP_594097.1| ribosome biogenesis protein Nob1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • pir||T50078 hypothetical protein SPAC1486.09 [imported] - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • ribosome biogenesis protein Nob1 [Sanger Pombe]
  • 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe GN=nob1 PE=2 SV=1 [Swiss-Prot]
  • POSSIBLY ASSOCIATES WITH THE 26S PROTEASOME; SIMILAR TO S. CEREVISIAE NOB1: Q9UTK0; [pompepVF.fasta]
  • PROTEIN THAT MAY ASSOCIATES WITH THE 26S PROTEASOME; BY SIMILARITY TO YEAST NOB1: Q9UTK0; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||possibly associates with the 26S proteasome [pompepnew.fasta]
  • SPAC1486.09 protein [4896.FASTAC]
  • |||26S proteasome binding (predicted)|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|6523779|emb|CAB62419.1| SPAC1486.09 [Schizosaccharomyces pombe]gi|11359117|pir||T50078 hypothetical protein SPAC1486.09 [imported] - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||26S proteasome binding |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q9UTK0) Hypothetical protein [pompep4896_normal_reversed]
  • |||ribosome biogenesis protein Nob1 |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC1486.09 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC1486.09 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • 20S-pre-rRNA D-site endonuclease nob1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nob1 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 388 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    preribosome [ISSLink to PubMed article]
    nucleolus [IEA]
    Biological Process: ribosomal small subunit biogenesis [ISSLink to PubMed article]
    proteasome assembly [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    RNA binding [ISSLink to PubMed article]
    ribonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSITHLVL DTGGIICSST LLRNSAESFY TIPRVIAEIR DETSRKNFEL WGDQVIQRVP  60
   61 KPEFIKKVSE FAKQTGDYSS LSVTDIQILA LTYELEVEFN GGDWRLRKYP GQKHINGKPP 120
  121 SNSNSTEDAS KPTSSDTASV KETENSDPKS AENEVLEGET TQHSNNKEAH PNTEENKEQE 180
  181 DNEEDDEDDG WITPSNIRKK KAEDGVGESL VQPKHLKVAC ATTDFSMQNV LLQIGLNLVS 240
  241 SDGFKIQNVK RFVLRCHGCY TVVKDMEKKF CPSCGGNTLI KTTCSINSKG EFQVHLKKNF 300
  301 EWKTRGTKYS LPKPVHGTSN GKGKKNPVLR EDQPEYQRAV RRMQRKKEID LMDEDYLPSL 360
  361 LTGVTKDRMY VQIGAGRKNP NEVRRKKR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] FFAS03 1.96 Hypothetical protein AF0591
    2 View Details [118..214] deduced N/A No confident structure predictions are available.
    3 View Details [215..388] PSI-BLAST 26.39794 Solution Structure of RSGI RUH-035, a Zn-ribbon module in Mouse cDNA


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.64

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle