Protein Overview: SPCC1739.07

General Information:
Name(s) found:	SPCC1739.07 [Sanger Pombe]
Description(s) found: SHOW ONLY BEST	pir\|\|T41115 sun-cor hormone receptor repression complex homolog - fission yeast (Schizosaccharomyces pombe) [NCBI NR] gi\|74582458\|sp\|O74469.1\|YQC7_SCHPO RecName: Full=Exosome complex protein C1739.07 [NCBI NR] gi\|3581883\|emb\|CAA20781.1\| substrate-specific nuclear cofactor for exosome activity (predicted) [Schizosaccharomyces pombe] [NCBI NR] gi\|19075915\|ref\|NP_588415.1\| substrate-specific nuclear cofactor for exosome activity (predicted) [Schizosaccharomyces pombe] [NCBI NR] substrate-specific nuclear cofactor for exosome activity [Sanger Pombe] Exosome complex protein C1739.07 OS=Schizosaccharomyces pombe GN=SPCC1739.07 PE=1 SV=1 [Swiss-Prot] SIMILAR TO DNA-BINDING PROTEIN C1D: O74469; [pompepVF.fasta] SIMILAR TO DNA BINDING PROTEIN C1D: O74469; [pompepV13] Hypothetical protein [pompep4896] \|\|\|similar to DNA-binding protein c1D [pompepnew.fasta] SPCC1739.07 protein [4896.FASTAC] \|\|\|substrate-specific nuclear cofactor for exosome activity (predicted)\|Schizosaccharomyces pombe\|chr 3\|\|\|Manual [pombe041504.fasta] hypothetical protein [Schizosaccharomyces pombe]gi\|3581883\|emb\|CAA20781.1\| SPCC1739.07 [Schizosaccharomyces pombe]gi\|7493441\|pir\|\|T41115 sun-cor hormone receptor repression complex homolog - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas] \|\|\|substrate-specific nuclear cofactor for exosome activity \|Schizosaccharomyces pombe\|chr 3\|\|\|Manual [pompep2242005.fasta] (O74469) Hypothetical protein [pompep4896_normal_reversed] hypothetical protein SPCC1739.07 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta] SPCC1739.07 [Schizosaccharomyces pombe] [nr-271106-contam.fasta] \|cti1\|\|Cut3 interacting protein Cti1, predicted exosome subunit\|Schizosaccharomyces pombe\|chr 3\|\|\|Manual [Other_S_Pombe_12-15-2011_reversed.fasta] Exosome complex protein C1739.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1739.07 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
Organism:	Schizosaccharomyces pombe
Length:	133 amino acids
Gene Ontology:
Cellular Component:	nuclear exosome (RNase complex) [ISS] nucleus [IDA] cytosol [IDA]
Biological Process:	snRNA processing [ISS] RNA 3'-end processing [ISS] snoRNA processing [ISS] mRNA catabolic process [ISS] maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [ISS] double-strand break repair [ISS]
Molecular Function:	RNA binding [IEA]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MDPEYSELFE RLNKQLDNVE DVLKPLKDAE SIFELAEGKS ELEQAKLYIT MSYAINSTLY 60 61 SFYKLNGIDA SERPVMQELQ RVKNYISKIQ QAEKNVNPKT EAVNTSNAAI SSSSSNRPKV 120 121 AKDAATRIIK HHT

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..133]	Pfam	22.468521	No description for PF04000.6 was found. Confident ab initio structure predictions are available.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle