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Protein Overview: SPCC1739.07

General Information:
Name(s) found: SPCC1739.07 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • substrate-specific nuclear cofactor for exosome activity [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 133 amino acids

    Gene Ontology:
    Cellular Component: nuclear exosome (RNase complex) [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: snRNA processing [ISSLink to PubMed article]
    RNA 3'-end processing [ISSLink to PubMed article]
    snoRNA processing [ISSLink to PubMed article]
    mRNA catabolic process [ISSLink to PubMed article]
    maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [ISSLink to PubMed article]
    double-strand break repair [ISS]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPEYSELFE RLNKQLDNVE DVLKPLKDAE SIFELAEGKS ELEQAKLYIT MSYAINSTLY  60
   61 SFYKLNGIDA SERPVMQELQ RVKNYISKIQ QAEKNVNPKT EAVNTSNAAI SSSSSNRPKV 120
  121 AKDAATRIIK HHT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..133] Pfam 22.468521 No description for PF04000.6 was found. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle