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Protein Overview: SPBC19C2.13c

General Information:
Name(s) found: SPBC19C2.13c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • conserved eukaryotic protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 366 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [TASLink to PubMed article]
    cytosolic tRNA wobble base thiouridylase complex [IDALink to PubMed article]
    Biological Process: wobble position uridine thiolation [IPILink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNTALDNSA DSKCSKCDNK ATVLTKSDAV CDSCFVRRIE NKIRRQFELV RPNLQGRKSK  60
   61 RAMLAISGGI SSMAMLETAN YLSKYRDDNY RPMFDELLAV HFQWGTDSAV AKTIEESISK 120
  121 NYPKCPFKVI GEAELLNRTI ATDSRGNIEI NADNEKFNPE VISSLASRQD LLYRIRDKLL 180
  181 VSYARKANCD TIVFGDSGTT IAARVLELVA EGRGFAIPWY TSVCSKLPNC DTFLLRPLRE 240
  241 VLSSDLKSYM NIKGLAFCDS LIEARPNTIH GVTESYFSSL NDTFPSLVST VVKMSSKLHV 300
  301 PSTEAICTIC NLPMQEDAET WLQKTTVEHP DSVEGIKNQN VCYGCSVSLK SLKGTLHIPD 360
  361 IEKEGI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..366] PSI-BLAST 35.522879 GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity
    		•  3.71561290487771 bayes_pls_golite062009
  • DNA binding
    		•  0.992954560970173 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.953721017285257 bayes_pls_golite062009
  • catalytic activity
    		•  0.828867994386867 bayes_pls_golite062009
  • binding
    		•  0.752095595503409 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.724532065311415 bayes_pls_golite062009
  • transferase activity
    		•  0.0776944314618701 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle