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Protein Overview: air1

General Information:
Name(s) found: air1 / SPBP35G2.08c [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • zinc knuckle TRAMP complex subunit Air1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 313 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    TRAMP complex [IDALink to PubMed article]
    Biological Process: mRNA export from nucleus [ISSLink to PubMed article]
    rRNA catabolic process [ISSLink to PubMed article]
    snRNA catabolic process [ISSLink to PubMed article]
    snoRNA catabolic process [ISSLink to PubMed article]
    tRNA catabolic process [ISSLink to PubMed article]
    ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSNQKAES DDGSDIDDAA LLQKINSLPI DQSITNSVSL EKHDFQGSDD HDSSTDLSDS  60
   61 TLEDVEGSEW ADVSRGRYFG SDPSESIVCH NCKGNGHISK DCPHVLCTTC GAIDDHISVR 120
  121 CPWTKKCMNC GLLGHIAARC SEPRKRGPRV CRTCHTDTHT SSTCPLIWRY YVEKEHPVRI 180
  181 DVSEVRKFCY NCASDEHFGD DCTLPSRSNY PESTAFCEAN CPSGNDASNK EFFETRRKEF 240
  241 QLERREQNRN QKSSKQRPFH KPGNSLASRL GSKPKSFKRK HSPPSEENGN LSFHSSDGRK 300
  301 FTKTSKKNRK RKW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..86] PSI-BLAST 14.221849 HIV-1 CAPSID PROTEIN C-TERMINAL FRAGMENT PLUS GAG P2 DOMAIN
    2 View Details [87..156] PSI-BLAST 5.39794 NUCLEOCAPSID ZINC FINGERS DETECTED IN RETROVIRUSES: EXAFS STUDIES ON INTACT VIRUSES AND THE SOLUTION-STATE STRUCTURE OF THE NUCLEOCAPSID PROTEIN FROM HIV-1
    3 View Details [157..214] FFAS03 2.22 Solution Structure of the Zinc-finger domain in LIN-28
    4 View Details [215..313] PSI-BLAST 4.69897 Solution Structure of the Human Immunodeficiency Virus Type 1 p6 Protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  3.04588712677166 bayes_pls_golite062009
  • DNA binding
    		•  2.53317408686316 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.33828046499668 bayes_pls_golite062009
  • binding
    		•  2.07015157850093 bayes_pls_golite062009
  • transcription factor activity
    		•  2.0090791129794 bayes_pls_golite062009
  • protein binding
    		•  1.30905787243512 bayes_pls_golite062009
  • transcription activator activity
    		•  0.68790059848359 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle