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Protein Overview: SPBC1734.07c

General Information:
Name(s) found: SPBC1734.07c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • TRAPP complex subunit Trs85 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 618 amino acids

    Gene Ontology:
    Cellular Component: TRAPP complex [ISSLink to PubMed article]
    nucleus [RCALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    autophagy [ISSLink to PubMed article]
    peroxisome degradation [ISSLink to PubMed article]
    intracellular protein transport [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNLSAKGI FQHASANASG ELFQEPVTED LEKVMQSKGL YSMEELCSII QEAYAPRVSV  60
   61 LCSRDADEFA MRKGYPKGFW ELLYPFGDRI RGKVNRRGMN GEMLTLENLN LHFVPIDALE 120
  121 SHLSEASFPS LRSVLCERYP GLVSPEPPSD YSFGVHYKNV ERWAWTLAHE GNYQMPLPVY 180
  181 VRQLLTGIPI TPFETFSHPV AHLVVVTSHN PSPFESLRSL INSIPYLSLP AFVFNDINYL 240
  241 FVYVHDEDQH DLELSMAIFD TMKQTFGDCG YFLRLHSQKA TLDYEHTVPF PTSSWLSAEE 300
  301 RLHLLSNTDT EIRLLFESDN ESLRRLSSHI AFNGIVSYLD KCVRAWDDQY ASPRRGITGK 360
  361 LLFASRKYLS SSNASTNSNY FPSSNAYRPF SPEAYLRKLA DYSFMLRDYS HANQIYEIAS 420
  421 RQYENDGACL YSAASLEMIV ITEHILHLKM PYMSLTNTLR INEYMQSAML NYLNKSFNSY 480
  481 YHAARCFLLL GQFLSCLPAP KVDDAANWNA GLLYSKRLGP VGRAMIFQQT HTLFKSLSYL 540
  541 KTESTDPFSN KRTRKAALWC VLTADAWLRC RIPFRAKPFV EEAKLFYGKI DWKDLKECVA 600
  601 ALDEVEVSKQ PASNIPSS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] MSA 1.028994 View MSA. Confident ab initio structure predictions are available.
    2 View Details [90..210] deduced N/A No confident structure predictions are available.
    3 View Details [211..352] MSA 1.036977 View MSA. No confident structure predictions are available.
    4 View Details [353..541] MSA 1.038997 View MSA. No confident structure predictions are available.
    5 View Details [542..618] MSA 1.036989 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle