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Protein Overview: SPBC13E7.03c

General Information:
Name(s) found: SPBC13E7.03c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • RNA hairpin binding protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 713 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: nuclear-transcribed mRNA poly(A) tail shortening [ISS]
    DNA replication, Okazaki fragment processing [ISS]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVVEGRRKT CLDVVDSPSS RQKQTIAVSL VDGKNYPTRF LNSRTIDKLK QELNTSNLST  60
   61 GEMSTNETLK NAQEVAGKLL SEENEDSISE HFDEYLGADK PGISFLTRLK TLESWFQSLS 120
  121 LQDRLTTLRT LLHHLPSQEI STLLSSSLTS SPSNSGLSLD KSLPSSPKGD SPSLSSSLPS 180
  181 LTTKSNLSGN LNMVTPASTQ GPAFSSKHGF SNALSTASPI PVRTSSVSST YLTQDREASS 240
  241 KNCLSKALAF SSIEPPASSA STSPRNTPTP SNNGTSINAN VTSSLTSNST GKTSKTTDLL 300
  301 IAASKKSLPS NSTPSKPNTS FFETPHNNIW DSRDRGAFSA PPAPFFPLGF SPHLNDESSR 360
  361 SRWSNISYSP PPPPPPPELL NHSPKSRPLG DKPYLFYRNN QIGPRTRTEG RSSITEGKPF 420
  421 LSSSLRFEHV PSANDLNSVV NARVEKSTGQ PSTPLNRQHY FNELPHSTTP VTLPSLIHGS 480
  481 EIDRRRSGFC LNNFNSTPPF QPYHYEIGSG LPQQMHATNT ILTNPIDPNS NISTPVGMHL 540
  541 CTLPYTYQPF SSVEKIETPP NNSKNQTYRR SSRGSNKTRK SISHSKNTDK HVGNELPQDI 600
  601 PSWLRSLRLH KYTNNLKDTD WDALVSLSDL DLQNRGIMAL GARRKLLKSF QEVAPLVSSK 660
  661 KMNENLKAAK NQSSESLTSF KGHTDSEDLP SGSMSNEISS NSTKQDVSSS SMD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..206] MSA 1.191995 View MSA. No confident structure predictions are available.
    2 View Details [207..349] MSA 2.197989 View MSA. No confident structure predictions are available.
    3 View Details [350..543] MSA 3.197997 View MSA. No confident structure predictions are available.
    4 View Details [544..713] PSI-BLAST 30.0 RNA recognition by the Vts1 SAM domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle