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Protein Overview: vip1

General Information:
Name(s) found: vip1 / SPAC10F6.06 [Sanger Pombe]
Description(s) found:
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  • pir||T37500 vip1 protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|41018386|sp|P87216.1|VIPI_SCHPO RecName: Full=Protein vip1 [NCBI NR]
  • gi|2661611|emb|CAA15719.1| RNA-binding protein Vip1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|2190516|emb|CAA73975.1| Vip1 protein [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19114169|ref|NP_593257.1| RNA-binding protein Vip1 [Schizosaccharomyces pombe] [NCBI NR]
  • RNA-binding protein Vip1 [Sanger Pombe]
  • Protein vip1 OS=Schizosaccharomyces pombe GN=vip1 PE=1 SV=1 [Swiss-Prot]
  • Protein vip1 - Schizosaccharomyces pombe (Fission yeast) [Swiss-Prot]
  • VIP1 PROTEIN: P87216; [pompepVF.fasta]
  • VIP1 protein (P53 antigen homolog) [pompep4896]
  • |vip1||rrm RNA recognition motif [pompepnew.fasta]
  • Protein vip1 [4896.FASTAC]
  • |vip1||rrm RNA recognition motif|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • vip1 protein [Schizosaccharomyces pombe]gi|2190516|emb|CAA73975.1| Vip1 protein [Schizosaccharomyces pombe]gi|2661611|emb|CAA15719.1| vip1 [Schizosaccharomyces pombe]gi|41018386|sp|P87216|VIP1_SCHPO Protein vip1gi|7493708|pir||T37500 vip1 protein - fi [nrdb_11152004_Chlamydomonas]
  • (P87216) VIP1 protein (P53 antigen homolog) [pompep4896_normal_reversed]
  • |vip1||RNA-binding protein Vip1|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC10F6.06 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC10F6.06 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • Vip1 protein [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vip1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 257 amino acids

    Gene Ontology:
    Cellular Component: cytosol [IDALink to PubMed article]
    Biological Process: cellular response to stress [IEPLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQVIVTNI SPEVTEKQIS DFFSFCGKVS NISTEKSGET QTAKIQFERP SATKTALLLQ  60
   61 DALLGQNKIQ ITSEDGGAAS TTDQGGAGGD QAARQEDKPR SAIISELLSR GYHLSDVTLE 120
  121 KSIQLDQSYG VSSKFKGILE SALSGVRSVN ERYHVTEKAN EVDNKFAISD KLNRTSSLVS 180
  181 TYFHKALETA AGTSAGQKVQ NAYEDGKNQL LGIHNEARRL ADAKNQAEGT ASPASSTPTA 240
  241 PAEKEPTAPT TESKTTE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..257] PSI-BLAST 16.154902 No description for 2ghpA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.83617308719152 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.44597021381278 bayes_pls_golite062009
  • RNA binding
    		•  0.944678840005785 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle