YRC Public Data Repository - Protein Structure Prediction

Protein:	vip1
Organism:	Schizosaccharomyces pombe
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vip1.

Description	E-value	Query Range	Subject Range
gi\|73992493 - gi\|73992493\|ref\|XP_534430.2\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 1 [Canis fam...	194.0	[0..4]	[256..12]
gi\|114682135 - gi\|114682135\|ref\|XP_514668.2\| PREDICTED: poly(A)-binding protein, cytoplasmic 1-like [Pan troglodyte...	194.0	[0..4]	[256..12]
PABPC1L - poly(A) binding protein, cytoplasmic 1-like	193.0	[0..4]	[256..12]
gi\|109091847 - gi\|109091847\|ref\|XP_001109542.1\| PREDICTED: poly(A) binding protein, cytoplasmic 1 [Macaca mulatta]	193.0	[0..4]	[256..12]
gi\|76633747 - gi\|76633747\|ref\|XP_881817.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	193.0	[0..4]	[256..12]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQVIVTNI SPEVTEKQIS DFFSFCGKVS NISTEKSGET QTAKIQFERP SATKTALLLQ  60
   61 DALLGQNKIQ ITSEDGGAAS TTDQGGAGGD QAARQEDKPR SAIISELLSR GYHLSDVTLE 120
  121 KSIQLDQSYG VSSKFKGILE SALSGVRSVN ERYHVTEKAN EVDNKFAISD KLNRTSSLVS 180
  181 TYFHKALETA AGTSAGQKVQ NAYEDGKNQL LGIHNEARRL ADAKNQAEGT ASPASSTPTA 240
  241 PAEKEPTAPT TESKTTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	2ghpA
Description:	No description for 2ghpA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.83617308719152	bayes_pls_golite062009
nucleic acid binding	1.44597021381278	bayes_pls_golite062009
RNA binding	0.944678840005785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: