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Protein Overview: SPCC320.11c

General Information:
Name(s) found: SPCC320.11c [Sanger Pombe]
Description(s) found:
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  • pir||T41300 protein involved in 60S ribosome subunit biogene sis - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3646459|emb|CAA20923.1| RNA-binding protein [Schizosaccharomyces pombe] [NCBI NR]
  • gi|2995373|emb|CAA18313.1| SPCC320.11c [Schizosaccharomyces pombe] [NCBI NR]
  • gi|193806212|sp|Q1MTQ9.1|NIP7_SCHPO RecName: Full=60S ribosome subunit biogenesis protein nip7 [NCBI NR]
  • gi|19075218|ref|NP_587718.1| RNA-binding protein [Schizosaccharomyces pombe] [NCBI NR]
  • RNA-binding protein [Sanger Pombe]
  • 60S ribosome subunit biogenesis protein nip7 OS=Schizosaccharomyces pombe GN=nip7 PE=3 SV=1 [Swiss-Prot]
  • POSSIBLY INVOLVED IN 60S RIBOSOME SUBUNIT BIOGENESIS PUTATIVE RIBOSOME BIOGENESIS PROTEIN: O59788; [pompepVF.fasta]
  • PUTATIVE PROTEIN INVOLVED IN 60S RIBOSOME SUBUNIT BIOGENESIS PUTATIVE RIBOSOME BIOGENESIS PROTEIN: O59788; [pompepV13]
  • Hypothetical 20.9 kDa protein C320.11C in chromosome III [pompep4896]
  • ||SPCC330.18|possibly involved in 60S ribosomal subunit biogenesis [pompepnew.fasta]
  • SPCC330.18 protein (Spcc320.11c protein) [4896.FASTAC]
  • ||SPCC330.18|involved in ribosome biogenesis and assembly (predicted)|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • ||SPCC330.18|involved in ribosome biogenesis and assembly |Schizosaccharomyces pombe|chr 3|||Manual [pompep2242005.fasta]
  • putative protein involved in 60S ribosome subunit biogenesis. [Schizosaccharomyces pombe]gi|2995373|emb|CAA18313.1| SPCC320.11c [Schizosaccharomyces pombe]gi|3646459|emb|CAA20923.1| SPCC330.18 [Schizosaccharomyces pombe]gi|7492919|pir||T41300 protein i [nrdb_11152004_Chlamydomonas]
  • (O59788) Hypothetical 20.9 kDa protein C320.11C in chromosome III [pompep4896_normal_reversed]
  • ||SPCC330.18|RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPCC330.18 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPCC320.11c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • ||SPCC330.18|RNA-binding protein involved in ribosome biogenesis |Schizosaccharomyces pombe|chr 3|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • 60S ribosome subunit biogenesis protein nip7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nip7 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 180 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: ribosome biogenesis [ISSLink to PubMed article]
    ribosome assembly [IEA]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLTHEETK TFFEKLAQYI GKNITHLIDR PDDPHCFRLQ KDRVYYVSER AMKMATSVAR  60
   61 QNLMSLGICF GKFTKTNKFR LHITALDYIA QYARYKIWVK SNGEMPFLYG NHVLKAHVGR 120
  121 ITDDTPQHQG VVIYSMNDTP LGFGVTARST LELRRLEPTA IVAFHQADVG EYLRDEDTLF 180
  181

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..180] PSI-BLAST 95.69897 Crystal Structure of Northeast Structural Genomics Consortium Target HR2118: A Human Homolog of Saccharomyces cerevisiae Nip7p

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  2.67504868533195 bayes_pls_golite062009
  • binding
    		•  1.85616760502339 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.26170105245043 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25899985044692 bayes_pls_golite062009
  • DNA binding
    		•  1.00086161863786 bayes_pls_golite062009
  • transcription factor activity
    		•  0.459074630080185 bayes_pls_golite062009
  • protein binding
    		•  0.377070376016177 bayes_pls_golite062009
  • ligase activity
    		•  0.365702917579223 bayes_pls_golite062009
  • catalytic activity
    		•  0.147263815852997 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle